miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
607 3' -64.1 AC_000017.1 + 12230 0.67 0.180492
Target:  5'- uCC-GGCCccagcugccuccagGGCGCGuCGGCuuGGggcccAGCGCa -3'
miRNA:   3'- -GGaCCGG--------------UCGCGC-GUCGggCC-----UCGCG- -5'
607 3' -64.1 AC_000017.1 + 11542 0.68 0.150665
Target:  5'- --cGGCCGccacgugugcGCGCGCGGgacuaauCCCGGuccGCGCg -3'
miRNA:   3'- ggaCCGGU----------CGCGCGUC-------GGGCCu--CGCG- -5'
607 3' -64.1 AC_000017.1 + 6474 0.69 0.132024
Target:  5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3'
miRNA:   3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5'
607 3' -64.1 AC_000017.1 + 22666 0.69 0.121685
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
607 3' -64.1 AC_000017.1 + 16067 0.71 0.085033
Target:  5'- --cGGCCGcguuuGUGCGC-GCCCcaGGGGCGCg -3'
miRNA:   3'- ggaCCGGU-----CGCGCGuCGGG--CCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 22795 0.77 0.031032
Target:  5'- gCUGGCCAGCGUGCAucaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
607 3' -64.1 AC_000017.1 + 5485 0.79 0.022367
Target:  5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3'
miRNA:   3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5'
607 3' -64.1 AC_000017.1 + 25543 0.8 0.017761
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 5419 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 18999 0.66 0.232028
Target:  5'- --aGGCUgaaguacgucucgguGGCGCGggcgaacugcacCAGCCCGGGGCu- -3'
miRNA:   3'- ggaCCGG---------------UCGCGC------------GUCGGGCCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.