miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
607 3' -64.1 AC_000017.1 + 16435 0.71 0.087432
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
607 3' -64.1 AC_000017.1 + 18999 0.66 0.232028
Target:  5'- --aGGCUgaaguacgucucgguGGCGCGggcgaacugcacCAGCCCGGGGCu- -3'
miRNA:   3'- ggaCCGG---------------UCGCGC------------GUCGGGCCUCGcg -5'
607 3' -64.1 AC_000017.1 + 22666 0.69 0.121685
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
607 3' -64.1 AC_000017.1 + 22795 0.77 0.031032
Target:  5'- gCUGGCCAGCGUGCAucaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
607 3' -64.1 AC_000017.1 + 23252 0.67 0.196777
Target:  5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3'
miRNA:   3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5'
607 3' -64.1 AC_000017.1 + 23847 0.66 0.212681
Target:  5'- -aUGGCCGcgggcuggguGUGCGCGGCaCC--AGCGCg -3'
miRNA:   3'- ggACCGGU----------CGCGCGUCG-GGccUCGCG- -5'
607 3' -64.1 AC_000017.1 + 25039 0.68 0.14707
Target:  5'- gCUGGCUugAGaCGCGCgAGCCUgccgacuuggaGGAGCGa -3'
miRNA:   3'- gGACCGG--UC-GCGCG-UCGGG-----------CCUCGCg -5'
607 3' -64.1 AC_000017.1 + 25371 0.68 0.156833
Target:  5'- aCCUGGCaaacggccaugGGCGUGUGGCagcagugccuggaGGAGCGCa -3'
miRNA:   3'- -GGACCGg----------UCGCGCGUCGgg-----------CCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 25543 0.8 0.017761
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 26542 0.66 0.20726
Target:  5'- --gGGUCGGCGaacggGCAGUgCCGGcGGCGCc -3'
miRNA:   3'- ggaCCGGUCGCg----CGUCG-GGCC-UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.