Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6103 | 5' | -62.1 | NC_001826.1 | + | 2529 | 1.07 | 0.000626 |
Target: 5'- cCAGGGCCGGCCAGCCUCAGCCAGAACc -3' miRNA: 3'- -GUCCCGGCCGGUCGGAGUCGGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 10553 | 0.66 | 0.538488 |
Target: 5'- -uGGGuuGGCCcauauAGCUUCAGauuuaUAGGACa -3' miRNA: 3'- guCCCggCCGG-----UCGGAGUCg----GUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 19225 | 0.7 | 0.335552 |
Target: 5'- aAGGGCucuaagaaaaaggCGGaCCAGCCUUgccaagaaagAGCCGGGGCc -3' miRNA: 3'- gUCCCG-------------GCC-GGUCGGAG----------UCGGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 30231 | 0.68 | 0.417357 |
Target: 5'- -cGuGG-CGGCCAGCCUCugguaucGCCuGAACa -3' miRNA: 3'- guC-CCgGCCGGUCGGAGu------CGGuCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 31995 | 0.68 | 0.417357 |
Target: 5'- gCGGGGCCGGUUGGUCg-AG-CAGGACa -3' miRNA: 3'- -GUCCCGGCCGGUCGGagUCgGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 41947 | 0.74 | 0.181313 |
Target: 5'- aAGGGCgCGGCCAGCagcuugagUCAGCCGcuGGGCu -3' miRNA: 3'- gUCCCG-GCCGGUCGg-------AGUCGGU--CUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 82695 | 0.68 | 0.434942 |
Target: 5'- --uGGCCGGCCaucAGCUUCAGCuCGGcgauGGCg -3' miRNA: 3'- gucCCGGCCGG---UCGGAGUCG-GUC----UUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99062 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99162 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99262 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99362 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99462 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99561 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99661 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99761 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99861 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 99961 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100061 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100161 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100261 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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