Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6103 | 5' | -62.1 | NC_001826.1 | + | 100361 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100461 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100560 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100660 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100760 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100860 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 100960 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 101060 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 101160 | 0.67 | 0.489184 |
Target: 5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3' miRNA: 3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 114669 | 0.7 | 0.336302 |
Target: 5'- uGGuGGCUGGCucaCAGCCUCAGCCcuguuACa -3' miRNA: 3'- gUC-CCGGCCG---GUCGGAGUCGGucu--UG- -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 118142 | 0.68 | 0.417357 |
Target: 5'- gGGGGCUcaucuCCAGCCUCccuGCCAGGGg -3' miRNA: 3'- gUCCCGGcc---GGUCGGAGu--CGGUCUUg -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 118551 | 0.71 | 0.267347 |
Target: 5'- cCGGGGCCGgaGCUGGcCCUCggaGGCCGGAGa -3' miRNA: 3'- -GUCCCGGC--CGGUC-GGAG---UCGGUCUUg -5' |
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6103 | 5' | -62.1 | NC_001826.1 | + | 119030 | 0.66 | 0.509249 |
Target: 5'- gGGGGCUGGaCCc-CCUCcGCCGGGGg -3' miRNA: 3'- gUCCCGGCC-GGucGGAGuCGGUCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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