miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6103 5' -62.1 NC_001826.1 + 99462 0.67 0.489184
Target:  5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3'
miRNA:   3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5'
6103 5' -62.1 NC_001826.1 + 99561 0.67 0.489184
Target:  5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3'
miRNA:   3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5'
6103 5' -62.1 NC_001826.1 + 99661 0.67 0.489184
Target:  5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3'
miRNA:   3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5'
6103 5' -62.1 NC_001826.1 + 99761 0.67 0.489184
Target:  5'- -cGGGCCGGgCAGCCcgcucccUCGcuCCGGGGCc -3'
miRNA:   3'- guCCCGGCCgGUCGG-------AGUc-GGUCUUG- -5'
6103 5' -62.1 NC_001826.1 + 82695 0.68 0.434942
Target:  5'- --uGGCCGGCCaucAGCUUCAGCuCGGcgauGGCg -3'
miRNA:   3'- gucCCGGCCGG---UCGGAGUCG-GUC----UUG- -5'
6103 5' -62.1 NC_001826.1 + 30231 0.68 0.417357
Target:  5'- -cGuGG-CGGCCAGCCUCugguaucGCCuGAACa -3'
miRNA:   3'- guC-CCgGCCGGUCGGAGu------CGGuCUUG- -5'
6103 5' -62.1 NC_001826.1 + 118142 0.68 0.417357
Target:  5'- gGGGGCUcaucuCCAGCCUCccuGCCAGGGg -3'
miRNA:   3'- gUCCCGGcc---GGUCGGAGu--CGGUCUUg -5'
6103 5' -62.1 NC_001826.1 + 31995 0.68 0.417357
Target:  5'- gCGGGGCCGGUUGGUCg-AG-CAGGACa -3'
miRNA:   3'- -GUCCCGGCCGGUCGGagUCgGUCUUG- -5'
6103 5' -62.1 NC_001826.1 + 114669 0.7 0.336302
Target:  5'- uGGuGGCUGGCucaCAGCCUCAGCCcuguuACa -3'
miRNA:   3'- gUC-CCGGCCG---GUCGGAGUCGGucu--UG- -5'
6103 5' -62.1 NC_001826.1 + 19225 0.7 0.335552
Target:  5'- aAGGGCucuaagaaaaaggCGGaCCAGCCUUgccaagaaagAGCCGGGGCc -3'
miRNA:   3'- gUCCCG-------------GCC-GGUCGGAG----------UCGGUCUUG- -5'
6103 5' -62.1 NC_001826.1 + 118551 0.71 0.267347
Target:  5'- cCGGGGCCGgaGCUGGcCCUCggaGGCCGGAGa -3'
miRNA:   3'- -GUCCCGGC--CGGUC-GGAG---UCGGUCUUg -5'
6103 5' -62.1 NC_001826.1 + 41947 0.74 0.181313
Target:  5'- aAGGGCgCGGCCAGCagcuugagUCAGCCGcuGGGCu -3'
miRNA:   3'- gUCCCG-GCCGGUCGg-------AGUCGGU--CUUG- -5'
6103 5' -62.1 NC_001826.1 + 2529 1.07 0.000626
Target:  5'- cCAGGGCCGGCCAGCCUCAGCCAGAACc -3'
miRNA:   3'- -GUCCCGGCCGGUCGGAGUCGGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.