miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6106 5' -57.2 NC_001826.1 + 30515 0.66 0.817972
Target:  5'- aGGGAUGGuGCUUCCCaGGUUGaacaGCAGGu -3'
miRNA:   3'- gCUCUGUC-UGAAGGG-CCGGUg---CGUCC- -5'
6106 5' -57.2 NC_001826.1 + 71976 0.67 0.800439
Target:  5'- -uGGACuGAUUgacCCCGGCUAC-CGGGg -3'
miRNA:   3'- gcUCUGuCUGAa--GGGCCGGUGcGUCC- -5'
6106 5' -57.2 NC_001826.1 + 29038 0.67 0.791441
Target:  5'- aGGGACuGACg-CCUGGCCGCcCuGGg -3'
miRNA:   3'- gCUCUGuCUGaaGGGCCGGUGcGuCC- -5'
6106 5' -57.2 NC_001826.1 + 56211 0.68 0.75411
Target:  5'- uCGGGGCAGAagugUUCCUGGCCAaGUAc- -3'
miRNA:   3'- -GCUCUGUCUg---AAGGGCCGGUgCGUcc -5'
6106 5' -57.2 NC_001826.1 + 5609 0.68 0.715068
Target:  5'- -uAGAgGGuCUaaacacUCCGGCCACGCGGGu -3'
miRNA:   3'- gcUCUgUCuGAa-----GGGCCGGUGCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 31716 0.68 0.715068
Target:  5'- aGGGACauGGAgUUuugaaaauuugCCUGGCCACGgAGGg -3'
miRNA:   3'- gCUCUG--UCUgAA-----------GGGCCGGUGCgUCC- -5'
6106 5' -57.2 NC_001826.1 + 33786 0.69 0.685015
Target:  5'- uGAGcACAGAUUUCCCGGCaggcccCAC-CAGa -3'
miRNA:   3'- gCUC-UGUCUGAAGGGCCG------GUGcGUCc -5'
6106 5' -57.2 NC_001826.1 + 10191 0.69 0.664748
Target:  5'- cCGAGGCAGugUuuuacugugaUCCCGGCUACa---- -3'
miRNA:   3'- -GCUCUGUCugA----------AGGGCCGGUGcgucc -5'
6106 5' -57.2 NC_001826.1 + 116272 0.72 0.475387
Target:  5'- aGAGGCAGaACUUCCUccccaguguuauGGUCaAUGCAGGg -3'
miRNA:   3'- gCUCUGUC-UGAAGGG------------CCGG-UGCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 98919 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 101017 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 100917 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 100817 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 100718 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 100618 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 100518 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 100318 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 99019 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 99119 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5'
6106 5' -57.2 NC_001826.1 + 99219 0.73 0.429665
Target:  5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3'
miRNA:   3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.