miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
611 3' -53.6 AC_000017.1 + 9837 1.1 0.000627
Target:  5'- aUCAGCAGCACCUCCGCCAGAAACAACc -3'
miRNA:   3'- -AGUCGUCGUGGAGGCGGUCUUUGUUG- -5'
611 3' -53.6 AC_000017.1 + 18854 0.72 0.290694
Target:  5'- cUCAGCAGCuCCUCUGgCGGcGACAu- -3'
miRNA:   3'- -AGUCGUCGuGGAGGCgGUCuUUGUug -5'
611 3' -53.6 AC_000017.1 + 6551 0.72 0.33131
Target:  5'- -gGGCGGcCGCCUCUGCUGGAccAACGAg -3'
miRNA:   3'- agUCGUC-GUGGAGGCGGUCU--UUGUUg -5'
611 3' -53.6 AC_000017.1 + 5571 0.71 0.357616
Target:  5'- cUCGuGCGGCGCCUCCuCCAaGGGCAAg -3'
miRNA:   3'- -AGU-CGUCGUGGAGGcGGUcUUUGUUg -5'
611 3' -53.6 AC_000017.1 + 17330 0.7 0.385352
Target:  5'- --cGCGGCAUCUgccaCCGCC-GAGGCGACc -3'
miRNA:   3'- aguCGUCGUGGA----GGCGGuCUUUGUUG- -5'
611 3' -53.6 AC_000017.1 + 8727 0.7 0.408542
Target:  5'- gCGGUugaucuccugaaucuGGCGCCUCUGCguGaAGACGACg -3'
miRNA:   3'- aGUCG---------------UCGUGGAGGCGguC-UUUGUUG- -5'
611 3' -53.6 AC_000017.1 + 14276 0.69 0.434623
Target:  5'- cUCcGCGGUACCUgCgGCCuaccggggggAGAAACAGCa -3'
miRNA:   3'- -AGuCGUCGUGGA-GgCGG----------UCUUUGUUG- -5'
611 3' -53.6 AC_000017.1 + 28841 0.69 0.444909
Target:  5'- uUUGGCAGCACUgcagacugCCGCUAGGguaAGCAAg -3'
miRNA:   3'- -AGUCGUCGUGGa-------GGCGGUCU---UUGUUg -5'
611 3' -53.6 AC_000017.1 + 15298 0.69 0.455329
Target:  5'- -gGGUuguGCAgCCUCCGCagCGGggGCGGCa -3'
miRNA:   3'- agUCGu--CGU-GGAGGCG--GUCuuUGUUG- -5'
611 3' -53.6 AC_000017.1 + 12396 0.69 0.46588
Target:  5'- cUCuGCAGCGCCgcccgcaCCGCCGGGucCGuuGCg -3'
miRNA:   3'- -AGuCGUCGUGGa------GGCGGUCUuuGU--UG- -5'
611 3' -53.6 AC_000017.1 + 15247 0.69 0.487352
Target:  5'- cUCAGCGcGCuucuCCUCCGCCcGuguGGCAAa -3'
miRNA:   3'- -AGUCGU-CGu---GGAGGCGGuCu--UUGUUg -5'
611 3' -53.6 AC_000017.1 + 4286 0.69 0.487352
Target:  5'- gCAGUGGUgcuACCUCCaccCCAGAGACGGg -3'
miRNA:   3'- aGUCGUCG---UGGAGGc--GGUCUUUGUUg -5'
611 3' -53.6 AC_000017.1 + 9629 0.68 0.50928
Target:  5'- aCGGCAGCcCC-CCGCCAacccauaaccGGGACAugACg -3'
miRNA:   3'- aGUCGUCGuGGaGGCGGU----------CUUUGU--UG- -5'
611 3' -53.6 AC_000017.1 + 27219 0.68 0.50928
Target:  5'- aCAGguGCuggcGCCggguguggCCGCUGGAGAUGACg -3'
miRNA:   3'- aGUCguCG----UGGa-------GGCGGUCUUUGUUG- -5'
611 3' -53.6 AC_000017.1 + 34865 0.68 0.520399
Target:  5'- --cGCGGcCACUUccCCGCCAGGAACcauGACa -3'
miRNA:   3'- aguCGUC-GUGGA--GGCGGUCUUUG---UUG- -5'
611 3' -53.6 AC_000017.1 + 35037 0.68 0.528239
Target:  5'- -gAGCAGCACCUugcauuuuauaucgCCGCCcauGAACAAg -3'
miRNA:   3'- agUCGUCGUGGA--------------GGCGGuc-UUUGUUg -5'
611 3' -53.6 AC_000017.1 + 18095 0.67 0.57724
Target:  5'- gCGGUGGCGCCUUCaGCUGGGgcucgcuguggAGCGGCa -3'
miRNA:   3'- aGUCGUCGUGGAGG-CGGUCU-----------UUGUUG- -5'
611 3' -53.6 AC_000017.1 + 26550 0.67 0.57724
Target:  5'- -aAGCAGcCGCCgCCGUUAGcccaaGAGCAACa -3'
miRNA:   3'- agUCGUC-GUGGaGGCGGUC-----UUUGUUG- -5'
611 3' -53.6 AC_000017.1 + 13669 0.67 0.588798
Target:  5'- gCAGCGcCGCCUCUGCCugcucgcgcuGuuGCAACu -3'
miRNA:   3'- aGUCGUcGUGGAGGCGGu---------CuuUGUUG- -5'
611 3' -53.6 AC_000017.1 + 15219 0.66 0.612025
Target:  5'- gCAGCGGCcgaagcugccGCCcCCGCUgcGGAGGCuGCa -3'
miRNA:   3'- aGUCGUCG----------UGGaGGCGG--UCUUUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.