miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
611 3' -53.6 AC_000017.1 + 5460 0.66 0.623672
Target:  5'- cCGGCAGCGCUUCaGCaccagCAGGAcCAGCc -3'
miRNA:   3'- aGUCGUCGUGGAGgCG-----GUCUUuGUUG- -5'
611 3' -53.6 AC_000017.1 + 18626 0.66 0.635329
Target:  5'- -uGGCAGCACagguuUCUGCUGGGuguCAGCg -3'
miRNA:   3'- agUCGUCGUGg----AGGCGGUCUuu-GUUG- -5'
611 3' -53.6 AC_000017.1 + 11104 0.66 0.639991
Target:  5'- gCAGCGGCAgacaugcagggcacCCUCCccuucuccuaccgcGUCAGGAgggGCAACa -3'
miRNA:   3'- aGUCGUCGU--------------GGAGG--------------CGGUCUU---UGUUG- -5'
611 3' -53.6 AC_000017.1 + 8166 0.66 0.646982
Target:  5'- aCAGCccguGCACCgCUGCCAGuacuGCGcACg -3'
miRNA:   3'- aGUCGu---CGUGGaGGCGGUCuu--UGU-UG- -5'
611 3' -53.6 AC_000017.1 + 16265 0.66 0.646982
Target:  5'- gCGGCAGUGCCgggUCGgCGGcgguGGCGACg -3'
miRNA:   3'- aGUCGUCGUGGa--GGCgGUCu---UUGUUG- -5'
611 3' -53.6 AC_000017.1 + 3602 0.66 0.646982
Target:  5'- --uGCAGCAgCCgCCGCCAuGAGCAc- -3'
miRNA:   3'- aguCGUCGU-GGaGGCGGUcUUUGUug -5'
611 3' -53.6 AC_000017.1 + 11336 0.66 0.65862
Target:  5'- uUCAGCuGCACCcuugggugUCGCUcaGGAGAgGGCg -3'
miRNA:   3'- -AGUCGuCGUGGa-------GGCGG--UCUUUgUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.