miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
611	3'	-53.6	AC_000017.1	+	18626	0.66	0.635329
	Target:  5'- -uGGCAGCACagguuUCUGCUGGGuguCAGCg -3' miRNA:   3'- agUCGUCGUGg----AGGCGGUCUuu-GUUG- -5'
611	3'	-53.6	AC_000017.1	+	18854	0.72	0.290694
	Target:  5'- cUCAGCAGCuCCUCUGgCGGcGACAu- -3' miRNA:   3'- -AGUCGUCGuGGAGGCgGUCuUUGUug -5'
611	3'	-53.6	AC_000017.1	+	26550	0.67	0.57724
	Target:  5'- -aAGCAGcCGCCgCCGUUAGcccaaGAGCAACa -3' miRNA:   3'- agUCGUC-GUGGaGGCGGUC-----UUUGUUG- -5'
611	3'	-53.6	AC_000017.1	+	27219	0.68	0.50928
	Target:  5'- aCAGguGCuggcGCCggguguggCCGCUGGAGAUGACg -3' miRNA:   3'- aGUCguCG----UGGa-------GGCGGUCUUUGUUG- -5'
611	3'	-53.6	AC_000017.1	+	28841	0.69	0.444909
	Target:  5'- uUUGGCAGCACUgcagacugCCGCUAGGguaAGCAAg -3' miRNA:   3'- -AGUCGUCGUGGa-------GGCGGUCU---UUGUUg -5'
611	3'	-53.6	AC_000017.1	+	34865	0.68	0.520399
	Target:  5'- --cGCGGcCACUUccCCGCCAGGAACcauGACa -3' miRNA:   3'- aguCGUC-GUGGA--GGCGGUCUUUG---UUG- -5'
611	3'	-53.6	AC_000017.1	+	35037	0.68	0.528239
	Target:  5'- -gAGCAGCACCUugcauuuuauaucgCCGCCcauGAACAAg -3' miRNA:   3'- agUCGUCGUGGA--------------GGCGGuc-UUUGUUg -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home