Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 6551 | 0.72 | 0.33131 |
|
Target: 5'- -gGGCGGcCGCCUCUGCUGGAccAACGAg -3' miRNA: 3'- agUCGUC-GUGGAGGCGGUCU--UUGUUg -5' |
|||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 5571 | 0.71 | 0.357616 |
|
Target: 5'- cUCGuGCGGCGCCUCCuCCAaGGGCAAg -3' miRNA: 3'- -AGU-CGUCGUGGAGGcGGUcUUUGUUg -5' |
|||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 17330 | 0.7 | 0.385352 |
|
Target: 5'- --cGCGGCAUCUgccaCCGCC-GAGGCGACc -3' miRNA: 3'- aguCGUCGUGGA----GGCGGuCUUUGUUG- -5' |
|||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 28841 | 0.69 | 0.444909 |
|
Target: 5'- uUUGGCAGCACUgcagacugCCGCUAGGguaAGCAAg -3' miRNA: 3'- -AGUCGUCGUGGa-------GGCGGUCU---UUGUUg -5' |
|||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 15298 | 0.69 | 0.455329 |
|
Target: 5'- -gGGUuguGCAgCCUCCGCagCGGggGCGGCa -3' miRNA: 3'- agUCGu--CGU-GGAGGCG--GUCuuUGUUG- -5' |
|||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 12396 | 0.69 | 0.46588 |
|
Target: 5'- cUCuGCAGCGCCgcccgcaCCGCCGGGucCGuuGCg -3' miRNA: 3'- -AGuCGUCGUGGa------GGCGGUCUuuGU--UG- -5' |
|||||||
| 611 | 3' | -53.6 | AC_000017.1 | + | 11336 | 0.66 | 0.65862 |
|
Target: 5'- uUCAGCuGCACCcuugggugUCGCUcaGGAGAgGGCg -3' miRNA: 3'- -AGUCGuCGUGGa-------GGCGG--UCUUUgUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home