miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6111 5' -52.6 NC_001826.1 + 1946 0.66 0.960161
Target:  5'- uUUGGUggGAGGCuagauGGUcGUGGgcGGCCu -3'
miRNA:   3'- cGACCG--CUCUGu----CCAaCACCuuUCGG- -5'
6111 5' -52.6 NC_001826.1 + 13499 0.69 0.86857
Target:  5'- aGCUGGC-AGACAGGgauucugUGcUGGAaGAGUUg -3'
miRNA:   3'- -CGACCGcUCUGUCCa------AC-ACCU-UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 17888 0.67 0.928094
Target:  5'- uUUGGUGGGGCggGGGUUGguucUGGGucGCUg -3'
miRNA:   3'- cGACCGCUCUG--UCCAAC----ACCUuuCGG- -5'
6111 5' -52.6 NC_001826.1 + 25771 1.14 0.002143
Target:  5'- gGCUGGCGAGACAGGUUGUGGAAAGCCu -3'
miRNA:   3'- -CGACCGCUCUGUCCAACACCUUUCGG- -5'
6111 5' -52.6 NC_001826.1 + 28308 0.68 0.922492
Target:  5'- aGCUcgGGCGAGGgcCGGGaagGUGGGggaaccGGGCCc -3'
miRNA:   3'- -CGA--CCGCUCU--GUCCaa-CACCU------UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 48954 0.66 0.963755
Target:  5'- gGCUGGCuguguuuGACAcGUggGUGGGuuuGAGCCu -3'
miRNA:   3'- -CGACCGcu-----CUGUcCAa-CACCU---UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 56457 0.66 0.952252
Target:  5'- uCUGGCGAugGACAGGUaaaGUGuuGAGUg -3'
miRNA:   3'- cGACCGCU--CUGUCCAa--CACcuUUCGg -5'
6111 5' -52.6 NC_001826.1 + 69113 0.67 0.928094
Target:  5'- aUUGGCGGGGCGGGc-GUu--GAGCCa -3'
miRNA:   3'- cGACCGCUCUGUCCaaCAccuUUCGG- -5'
6111 5' -52.6 NC_001826.1 + 76175 0.68 0.904144
Target:  5'- uCUGGCGAGGguguuGGUgGUGGGucGUCg -3'
miRNA:   3'- cGACCGCUCUgu---CCAaCACCUuuCGG- -5'
6111 5' -52.6 NC_001826.1 + 87679 0.66 0.956328
Target:  5'- aGCUGGUccacgGcAGcCAGGUUGgGGAGGGUg -3'
miRNA:   3'- -CGACCG-----C-UCuGUCCAACaCCUUUCGg -5'
6111 5' -52.6 NC_001826.1 + 91797 0.73 0.64782
Target:  5'- cCUGaGUGAGGCAGuauuacacaGUUGUGGGAcAGCCu -3'
miRNA:   3'- cGAC-CGCUCUGUC---------CAACACCUU-UCGG- -5'
6111 5' -52.6 NC_001826.1 + 94766 0.66 0.967116
Target:  5'- -aUGGUGGGA-AGGUaUGcuacgGGGGAGCCu -3'
miRNA:   3'- cgACCGCUCUgUCCA-ACa----CCUUUCGG- -5'
6111 5' -52.6 NC_001826.1 + 98881 0.66 0.967116
Target:  5'- --gGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 98981 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99081 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99181 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99281 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99381 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99481 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5'
6111 5' -52.6 NC_001826.1 + 99581 0.66 0.956328
Target:  5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3'
miRNA:   3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.