Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6111 | 5' | -52.6 | NC_001826.1 | + | 100580 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99681 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99880 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99980 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100080 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100180 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100280 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100380 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100480 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99581 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99481 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99381 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 114696 | 0.68 | 0.897519 |
Target: 5'- gGCUGGcCGGGAaacacaauUAGGagcacuuuugGUGGAGAGCUc -3' miRNA: 3'- -CGACC-GCUCU--------GUCCaa--------CACCUUUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99781 | 0.67 | 0.938524 |
Target: 5'- --cGGCGGGAUGGGggGaaccgggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100780 | 0.67 | 0.938524 |
Target: 5'- --cGGCGGGAUGGGggGaaccgggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 56457 | 0.66 | 0.952252 |
Target: 5'- uCUGGCGAugGACAGGUaaaGUGuuGAGUg -3' miRNA: 3'- cGACCGCU--CUGUCCAa--CACcuUUCGg -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 98981 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99081 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99181 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99281 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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