miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6112 3' -61.3 NC_001826.1 + 100538 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100638 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99139 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99039 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 98939 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100937 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100238 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 114374 0.67 0.539089
Target:  5'- gCUCAGcuuGUcCGGCCUGGGCaugcggUACCCACu -3'
miRNA:   3'- -GGGUCcc-CA-GCCGGACUCG------AUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100837 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99239 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100079 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99180 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99380 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99879 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99579 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99280 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99080 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99779 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99979 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 99679 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.