miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6112 3' -61.3 NC_001826.1 + 100179 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100279 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 101078 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100778 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 101178 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100079 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100578 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100678 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100878 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100978 0.67 0.529377
Target:  5'- gCCGGGGGaCccgcaccccgGGCC-GGGCaGCCCGCu -3'
miRNA:   3'- gGGUCCCCaG----------CCGGaCUCGaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 118892 0.67 0.529377
Target:  5'- gCCGGGGGUCGGgggCggggGGGCUcgACCCc- -3'
miRNA:   3'- gGGUCCCCAGCCg--Ga---CUCGA--UGGGug -5'
6112 3' -61.3 NC_001826.1 + 99502 0.68 0.523581
Target:  5'- gCCGGGGGggacggcuccccaGGCC-GGGggACCCGCa -3'
miRNA:   3'- gGGUCCCCag-----------CCGGaCUCgaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100501 0.68 0.523581
Target:  5'- gCCGGGGGggaccgcuccccaGGCC-GGGggACCCGCa -3'
miRNA:   3'- gGGUCCCCag-----------CCGGaCUCgaUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 118617 0.68 0.510153
Target:  5'- cCCCGGGGG-CgGGCCcgGGGCUuacuUUCACu -3'
miRNA:   3'- -GGGUCCCCaG-CCGGa-CUCGAu---GGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100196 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99197 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99297 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99996 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 100096 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5'
6112 3' -61.3 NC_001826.1 + 99896 0.68 0.482818
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCGg -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.