miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6115 5' -58 NC_001826.1 + 119390 0.66 0.796136
Target:  5'- uCCUggcgCCCCCUacuguugugUCCAGgggcaGGGUGGc-- -3'
miRNA:   3'- -GGAa---GGGGGA---------AGGUCag---CCCACCuca -5'
6115 5' -58 NC_001826.1 + 118262 0.66 0.796136
Target:  5'- cCCccCCCUCUUCUuGggGGGUGGGGg -3'
miRNA:   3'- -GGaaGGGGGAAGGuCagCCCACCUCa -5'
6115 5' -58 NC_001826.1 + 26462 0.66 0.787088
Target:  5'- aCCUggaaaUCCCCUUaUCAGaaaGGGUGGGGc -3'
miRNA:   3'- -GGA-----AGGGGGAaGGUCag-CCCACCUCa -5'
6115 5' -58 NC_001826.1 + 119026 0.66 0.777901
Target:  5'- gCUggaCCCCCUccgCCGG--GGGUGGGGg -3'
miRNA:   3'- gGAa--GGGGGAa--GGUCagCCCACCUCa -5'
6115 5' -58 NC_001826.1 + 86366 0.67 0.717419
Target:  5'- gUUUCCCCCagCCugGGUCauugacgugucuguGGGUGGAGc -3'
miRNA:   3'- gGAAGGGGGaaGG--UCAG--------------CCCACCUCa -5'
6115 5' -58 NC_001826.1 + 99069 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100967 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100867 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100768 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100668 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100568 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100468 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100368 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100268 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100168 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 100068 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 99968 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 99868 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 99769 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5'
6115 5' -58 NC_001826.1 + 99669 0.68 0.680415
Target:  5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3'
miRNA:   3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.