miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6122 3' -56.6 NC_001826.1 + 118957 0.66 0.84007
Target:  5'- --cGCGGCCcguccucAGGCCCGGGcgGuagcggccgcgcCUGGGg -3'
miRNA:   3'- guuCGCCGG-------UCUGGGUCCuaU------------GACCU- -5'
6122 3' -56.6 NC_001826.1 + 117714 0.66 0.83251
Target:  5'- uGGGUGGCCAGaucuucagcGCUCGGGGaACaUGGGu -3'
miRNA:   3'- gUUCGCCGGUC---------UGGGUCCUaUG-ACCU- -5'
6122 3' -56.6 NC_001826.1 + 113883 0.66 0.82393
Target:  5'- cCAAGUcuauGCCAGGgCCAGGAccacAUUGGAg -3'
miRNA:   3'- -GUUCGc---CGGUCUgGGUCCUa---UGACCU- -5'
6122 3' -56.6 NC_001826.1 + 21725 0.66 0.818694
Target:  5'- aGGGCGGCC--GCCCaaacaaugaguaacuGGGGgaaGCUGGAu -3'
miRNA:   3'- gUUCGCCGGucUGGG---------------UCCUa--UGACCU- -5'
6122 3' -56.6 NC_001826.1 + 4468 0.66 0.815168
Target:  5'- -uGGCacuuGGCCuaAGAUCCAGGGcucGCUGGGa -3'
miRNA:   3'- guUCG----CCGG--UCUGGGUCCUa--UGACCU- -5'
6122 3' -56.6 NC_001826.1 + 39669 0.66 0.815168
Target:  5'- aCAAGCaGaCCuGGCCCAGGGUuccaaaguaUGGAu -3'
miRNA:   3'- -GUUCGcC-GGuCUGGGUCCUAug-------ACCU- -5'
6122 3' -56.6 NC_001826.1 + 73238 0.66 0.812506
Target:  5'- -uGGCGGCC-GACCUgauuaggagcaccaAGGAUAagcaggucCUGGAg -3'
miRNA:   3'- guUCGCCGGuCUGGG--------------UCCUAU--------GACCU- -5'
6122 3' -56.6 NC_001826.1 + 1 0.67 0.778486
Target:  5'- ---GCGcGCCcuggAGAUCCGGGGcugaUGCUGGGu -3'
miRNA:   3'- guuCGC-CGG----UCUGGGUCCU----AUGACCU- -5'
6122 3' -56.6 NC_001826.1 + 2393 0.67 0.778486
Target:  5'- gAGGCuGGCCGG-CCCuGGAaacgccACUGGGc -3'
miRNA:   3'- gUUCG-CCGGUCuGGGuCCUa-----UGACCU- -5'
6122 3' -56.6 NC_001826.1 + 118850 0.67 0.749512
Target:  5'- aGAGgGGCuCGGGCCCugcucgGGGAUGCccucGGAu -3'
miRNA:   3'- gUUCgCCG-GUCUGGG------UCCUAUGa---CCU- -5'
6122 3' -56.6 NC_001826.1 + 53733 0.68 0.69921
Target:  5'- ---aUGGCCGGACUucaauaCAGGggGCUGGAc -3'
miRNA:   3'- guucGCCGGUCUGG------GUCCuaUGACCU- -5'
6122 3' -56.6 NC_001826.1 + 118303 0.71 0.542919
Target:  5'- -uAGgGGCUGGGCCCccuggcaGGGAgGCUGGAg -3'
miRNA:   3'- guUCgCCGGUCUGGG-------UCCUaUGACCU- -5'
6122 3' -56.6 NC_001826.1 + 119030 0.71 0.533812
Target:  5'- -cGGCGcGCCcuggAGACCCGGG--GCUGGGg -3'
miRNA:   3'- guUCGC-CGG----UCUGGGUCCuaUGACCU- -5'
6122 3' -56.6 NC_001826.1 + 72410 0.71 0.512783
Target:  5'- aCAGGCGauGCCAGACCUgccaaguaccacuGGGGUAaauuCUGGAg -3'
miRNA:   3'- -GUUCGC--CGGUCUGGG-------------UCCUAU----GACCU- -5'
6122 3' -56.6 NC_001826.1 + 99227 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99327 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100126 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100026 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99926 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99826 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.