Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99027 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99127 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99227 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99327 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99427 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99527 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99627 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 100226 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 100126 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 100026 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99926 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99826 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 99727 | 0.73 | 0.419021 |
Target: 5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3' miRNA: 3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 113883 | 0.66 | 0.82393 |
Target: 5'- cCAAGUcuauGCCAGGgCCAGGAccacAUUGGAg -3' miRNA: 3'- -GUUCGc---CGGUCUgGGUCCUa---UGACCU- -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 73238 | 0.66 | 0.812506 |
Target: 5'- -uGGCGGCC-GACCUgauuaggagcaccaAGGAUAagcaggucCUGGAg -3' miRNA: 3'- guUCGCCGGuCUGGG--------------UCCUAU--------GACCU- -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 118850 | 0.67 | 0.749512 |
Target: 5'- aGAGgGGCuCGGGCCCugcucgGGGAUGCccucGGAu -3' miRNA: 3'- gUUCgCCG-GUCUGGG------UCCUAUGa---CCU- -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 118303 | 0.71 | 0.542919 |
Target: 5'- -uAGgGGCUGGGCCCccuggcaGGGAgGCUGGAg -3' miRNA: 3'- guUCgCCGGUCUGGG-------UCCUaUGACCU- -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 72410 | 0.71 | 0.512783 |
Target: 5'- aCAGGCGauGCCAGACCUgccaaguaccacuGGGGUAaauuCUGGAg -3' miRNA: 3'- -GUUCGC--CGGUCUGGG-------------UCCUAU----GACCU- -5' |
|||||||
6122 | 3' | -56.6 | NC_001826.1 | + | 107682 | 1.09 | 0.001868 |
Target: 5'- aCAAGCGGCCAGACCCAGGAUACUGGAc -3' miRNA: 3'- -GUUCGCCGGUCUGGGUCCUAUGACCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home