miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6124 3' -59 NC_001826.1 + 10840 1.08 0.001297
Target:  5'- uGAACCCGUCUAUCCCACCAGCCCCCAa -3'
miRNA:   3'- -CUUGGGCAGAUAGGGUGGUCGGGGGU- -5'
6124 3' -59 NC_001826.1 + 4509 0.76 0.227047
Target:  5'- --uCCCGUCUGUCCCAUCA-CCCCa- -3'
miRNA:   3'- cuuGGGCAGAUAGGGUGGUcGGGGgu -5'
6124 3' -59 NC_001826.1 + 26925 0.73 0.331071
Target:  5'- gGGGCCCGg--AUCCCcgaccucCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27204 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27244 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27284 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27324 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27364 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27404 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27444 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27164 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27124 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27084 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27044 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27004 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 26964 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 26885 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 26845 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 26805 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27484 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.