Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6124 | 3' | -59 | NC_001826.1 | + | 27484 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27164 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27204 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27244 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27284 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27324 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27364 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27404 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27444 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27124 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27084 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27044 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 4509 | 0.76 | 0.227047 |
Target: 5'- --uCCCGUCUGUCCCAUCA-CCCCa- -3' miRNA: 3'- cuuGGGCAGAUAGGGUGGUcGGGGgu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 26925 | 0.73 | 0.331071 |
Target: 5'- gGGGCCCGg--AUCCCcgaccucCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 26765 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 26805 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 26845 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 26885 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 26964 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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6124 | 3' | -59 | NC_001826.1 | + | 27004 | 0.72 | 0.362018 |
Target: 5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3' miRNA: 3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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