miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6126 5' -52.2 NC_001826.1 + 83886 0.66 0.974799
Target:  5'- aUGGAUaGAUAugGAggucUGcuuggaggauuucUCAGGGCGGUg -3'
miRNA:   3'- -ACUUA-CUGUugCU----AC-------------AGUCCCGCCGg -5'
6126 5' -52.2 NC_001826.1 + 30124 0.66 0.966103
Target:  5'- --uAUGACAAUGGUGUCcuGGGCagaaaaguGCCc -3'
miRNA:   3'- acuUACUGUUGCUACAGu-CCCGc-------CGG- -5'
6126 5' -52.2 NC_001826.1 + 28647 0.66 0.962666
Target:  5'- -----aGCuGCGAgucccgCGGGGCGGCCg -3'
miRNA:   3'- acuuacUGuUGCUaca---GUCCCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 24498 0.67 0.95092
Target:  5'- -aGAUGAUGGCuuucagGUCAGGGUucugGGCCa -3'
miRNA:   3'- acUUACUGUUGcua---CAGUCCCG----CCGG- -5'
6126 5' -52.2 NC_001826.1 + 31018 0.67 0.94651
Target:  5'- gGGcgGACAuguUGGUGgUGGGGCGGUg -3'
miRNA:   3'- aCUuaCUGUu--GCUACaGUCCCGCCGg -5'
6126 5' -52.2 NC_001826.1 + 37014 0.67 0.941848
Target:  5'- ---uUGugGG-GGUGUguGGGCGGCg -3'
miRNA:   3'- acuuACugUUgCUACAguCCCGCCGg -5'
6126 5' -52.2 NC_001826.1 + 97457 0.68 0.92632
Target:  5'- cGAAUGucuGGCG-UGUCAccccGaGGCGGCCa -3'
miRNA:   3'- aCUUACug-UUGCuACAGU----C-CCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 8 0.69 0.900013
Target:  5'- cUGGA-GAUccggGGCuGAUGcuggguucaggaguUCAGGGCGGCCg -3'
miRNA:   3'- -ACUUaCUG----UUG-CUAC--------------AGUCCCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 118547 0.69 0.888319
Target:  5'- cGGggGGCGGgGGUGUCuaguAGGG-GGCCu -3'
miRNA:   3'- aCUuaCUGUUgCUACAG----UCCCgCCGG- -5'
6126 5' -52.2 NC_001826.1 + 22760 0.69 0.873659
Target:  5'- ----gGACAugGAUGUUAGGGgugagGGUCg -3'
miRNA:   3'- acuuaCUGUugCUACAGUCCCg----CCGG- -5'
6126 5' -52.2 NC_001826.1 + 1942 0.7 0.865975
Target:  5'- gUGGGaGGCua-GAUgGUCGuGGGCGGCCu -3'
miRNA:   3'- -ACUUaCUGuugCUA-CAGU-CCCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 69458 0.71 0.824278
Target:  5'- gGAAUcACAACuuaguaugGGUGccCGGGGCGGCCc -3'
miRNA:   3'- aCUUAcUGUUG--------CUACa-GUCCCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 29199 0.71 0.815338
Target:  5'- aGAGUccuccCAACGGcccCAGGGCGGCCa -3'
miRNA:   3'- aCUUAcu---GUUGCUacaGUCCCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 38539 0.72 0.777869
Target:  5'- gUGGAucuUGGaGACGGUGgCGGuGGCGGCCu -3'
miRNA:   3'- -ACUU---ACUgUUGCUACaGUC-CCGCCGG- -5'
6126 5' -52.2 NC_001826.1 + 75765 0.74 0.633256
Target:  5'- aGAAUGGCAcaGCaGAUGUUGGaGGCGGgCg -3'
miRNA:   3'- aCUUACUGU--UG-CUACAGUC-CCGCCgG- -5'
6126 5' -52.2 NC_001826.1 + 21707 1.13 0.002648
Target:  5'- uUGAAUGACAACGAUGUCAGGGCGGCCg -3'
miRNA:   3'- -ACUUACUGUUGCUACAGUCCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.