miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6132 3' -52.5 NC_001826.1 + 119184 0.73 0.633717
Target:  5'- --uGGGCgCCCCCAGCcccGGGUCUCCAg -3'
miRNA:   3'- cauUCUGaGGGGGUUGu--UUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 118700 0.7 0.808451
Target:  5'- -gAGGGCaUCCCCgAGCAGGGCCcgagCCc -3'
miRNA:   3'- caUUCUG-AGGGGgUUGUUUCGGa---GGu -5'
6132 3' -52.5 NC_001826.1 + 118449 0.67 0.934079
Target:  5'- ----cACUCCCCCGACcccAGCCcCCu -3'
miRNA:   3'- cauucUGAGGGGGUUGuu-UCGGaGGu -5'
6132 3' -52.5 NC_001826.1 + 118413 0.68 0.883652
Target:  5'- cUGGGACUCCCUgG-CAGGGUCUUCc -3'
miRNA:   3'- cAUUCUGAGGGGgUuGUUUCGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 118334 0.72 0.71801
Target:  5'- --cAGGCUgCCCC-GCAguuccccGAGCCUCCAg -3'
miRNA:   3'- cauUCUGAgGGGGuUGU-------UUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 109794 0.68 0.883652
Target:  5'- -gGGGGCUCUCCCAGCcucuguGUCUUCGa -3'
miRNA:   3'- caUUCUGAGGGGGUUGuuu---CGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 104925 0.71 0.760077
Target:  5'- aGUGAGugUCCCCaCAcCGGAGCCacgaugcuugUCCu -3'
miRNA:   3'- -CAUUCugAGGGG-GUuGUUUCGG----------AGGu -5'
6132 3' -52.5 NC_001826.1 + 100943 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100843 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100744 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100644 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100544 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100444 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100344 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100244 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100144 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100044 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99944 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99844 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99745 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.