miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6134 5' -54.7 NC_001826.1 + 101877 0.66 0.904022
Target:  5'- uCUCuCUAGGCCgGCGAgcGGcGCGGCCGu-- -3'
miRNA:   3'- -GAG-GGUCCGG-UGUU--UC-UGCCGGUuug -5'
6134 5' -54.7 NC_001826.1 + 49096 0.66 0.904022
Target:  5'- uCUCCCuGGUguCAAAGAUGGUgGu-- -3'
miRNA:   3'- -GAGGGuCCGguGUUUCUGCCGgUuug -5'
6134 5' -54.7 NC_001826.1 + 86109 0.66 0.897421
Target:  5'- uUCCCAGGaaaucauuacccCCACAAucuuaaAGGCGGCaucGGCu -3'
miRNA:   3'- gAGGGUCC------------GGUGUU------UCUGCCGgu-UUG- -5'
6134 5' -54.7 NC_001826.1 + 101562 0.67 0.868592
Target:  5'- ---aUAGGCCA---GGugGGCCGAACc -3'
miRNA:   3'- gaggGUCCGGUguuUCugCCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 118536 0.67 0.860802
Target:  5'- -gCCCucggAGGCCG--GAGAgGGCCAGAg -3'
miRNA:   3'- gaGGG----UCCGGUguUUCUgCCGGUUUg -5'
6134 5' -54.7 NC_001826.1 + 5352 0.67 0.860802
Target:  5'- uUCCC-GGCCACGcAGGGcCGGCaagGACu -3'
miRNA:   3'- gAGGGuCCGGUGU-UUCU-GCCGgu-UUG- -5'
6134 5' -54.7 NC_001826.1 + 12166 0.67 0.836135
Target:  5'- gCUUCCAGGaaaGCAAGaccguggcuGACGGCCAGu- -3'
miRNA:   3'- -GAGGGUCCgg-UGUUU---------CUGCCGGUUug -5'
6134 5' -54.7 NC_001826.1 + 43118 0.68 0.809682
Target:  5'- uCUgCCA--CCACAAAGGCGGCUAuACc -3'
miRNA:   3'- -GAgGGUccGGUGUUUCUGCCGGUuUG- -5'
6134 5' -54.7 NC_001826.1 + 118965 0.68 0.800508
Target:  5'- gUCCuCAGGCCcggGCGGuaGCGGCCGcGCc -3'
miRNA:   3'- gAGG-GUCCGG---UGUUucUGCCGGUuUG- -5'
6134 5' -54.7 NC_001826.1 + 33322 0.68 0.800508
Target:  5'- gUCCCGGGCaCcCAGGGuuuUGGUUAGACa -3'
miRNA:   3'- gAGGGUCCG-GuGUUUCu--GCCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 27652 0.68 0.791171
Target:  5'- -aUCCGGGCCccagcuCGGAGGgGGCCGGGg -3'
miRNA:   3'- gaGGGUCCGGu-----GUUUCUgCCGGUUUg -5'
6134 5' -54.7 NC_001826.1 + 45111 0.68 0.78168
Target:  5'- uUCCCAuGCUACAGAGAgGGCaAGAa -3'
miRNA:   3'- gAGGGUcCGGUGUUUCUgCCGgUUUg -5'
6134 5' -54.7 NC_001826.1 + 102067 0.68 0.78168
Target:  5'- -aCCCGGGCCACGc--GCGaCCGGGCu -3'
miRNA:   3'- gaGGGUCCGGUGUuucUGCcGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 69063 0.7 0.722071
Target:  5'- aUCCCuguGGCUAgAGAGcaacuCGGCCAGAa -3'
miRNA:   3'- gAGGGu--CCGGUgUUUCu----GCCGGUUUg -5'
6134 5' -54.7 NC_001826.1 + 53921 0.71 0.627735
Target:  5'- uUCCCAGGCCugucaGGAGGgGGCgGAGa -3'
miRNA:   3'- gAGGGUCCGGug---UUUCUgCCGgUUUg -5'
6134 5' -54.7 NC_001826.1 + 119099 0.72 0.606574
Target:  5'- -gCCCGGGCCugA-GGACgGGCCGcGGCg -3'
miRNA:   3'- gaGGGUCCGGugUuUCUG-CCGGU-UUG- -5'
6134 5' -54.7 NC_001826.1 + 99086 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99186 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99386 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99286 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.