Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 69726 | 1.14 | 0.001014 |
Target: 5'- gCCAACGGAGGCUGACCCCAAAGCGGCa -3' miRNA: 3'- -GGUUGCCUCCGACUGGGGUUUCGCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 117691 | 0.74 | 0.433333 |
Target: 5'- cCCAcGCGaGAGGC-GGCCCCcucuGGGUGGCc -3' miRNA: 3'- -GGU-UGC-CUCCGaCUGGGGu---UUCGCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 17365 | 0.74 | 0.433333 |
Target: 5'- -aAACGGggagagcuccAGGCUGuCuCCCAGGGCGGUa -3' miRNA: 3'- ggUUGCC----------UCCGACuG-GGGUUUCGCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 118888 | 0.73 | 0.489255 |
Target: 5'- cCCGGCGGAGGggGuccaGCCCCcggcAGGGgGGCg -3' miRNA: 3'- -GGUUGCCUCCgaC----UGGGG----UUUCgCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 119037 | 0.71 | 0.599173 |
Target: 5'- cCCugcCGGGGGCUgGACCCCcuccgccgGGGGUGGg -3' miRNA: 3'- -GGuu-GCCUCCGA-CUGGGG--------UUUCGCCg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 29211 | 0.7 | 0.634151 |
Target: 5'- cCUAACcaAGGCagaguccucccaacGGCCCCAGGGCGGCc -3' miRNA: 3'- -GGUUGccUCCGa-------------CUGGGGUUUCGCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 118880 | 0.7 | 0.64033 |
Target: 5'- -gGGCGGggGGGCUcGACCCCccaggggggaAGAGgGGCu -3' miRNA: 3'- ggUUGCC--UCCGA-CUGGGG----------UUUCgCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 99779 | 0.7 | 0.644448 |
Target: 5'- cCCGGCGGgauggggggaaccggGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUUGCC---------------UCCga--CUGGGGUUUCGCcg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 100778 | 0.7 | 0.644448 |
Target: 5'- cCCGGCGGgauggggggaaccggGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUUGCC---------------UCCga--CUGGGGUUUCGCcg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 119091 | 0.69 | 0.681378 |
Target: 5'- cCCGA-GGAuGGCgcagggggGACCCCuGGGCaGGCa -3' miRNA: 3'- -GGUUgCCU-CCGa-------CUGGGGuUUCG-CCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 119140 | 0.69 | 0.69156 |
Target: 5'- cCCAggcGCGGGcGCaUGgcGCCCCAGGcGCGGCc -3' miRNA: 3'- -GGU---UGCCUcCG-AC--UGGGGUUU-CGCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 118792 | 0.69 | 0.701691 |
Target: 5'- gCGGgGGAGGCUugugggGGCCCCGggcccggggaGGGgGGCc -3' miRNA: 3'- gGUUgCCUCCGA------CUGGGGU----------UUCgCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 97456 | 0.69 | 0.701691 |
Target: 5'- gCGAauGucuGGCgUGucACCCCGAGGCGGCc -3' miRNA: 3'- gGUUgcCu--CCG-AC--UGGGGUUUCGCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 44226 | 0.69 | 0.701691 |
Target: 5'- -uGGCGGGGGa--ACCuCCAAGGCGGg -3' miRNA: 3'- ggUUGCCUCCgacUGG-GGUUUCGCCg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 118666 | 0.69 | 0.721767 |
Target: 5'- gUAGCGG-GGC---CCCCGGAGgGGCu -3' miRNA: 3'- gGUUGCCuCCGacuGGGGUUUCgCCG- -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 19542 | 0.68 | 0.74153 |
Target: 5'- uCCAG-GGGGGCUG-CCCgGGcugcAGCGGa -3' miRNA: 3'- -GGUUgCCUCCGACuGGGgUU----UCGCCg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 98997 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 99297 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 99197 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
|||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 99097 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home