Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6137 | 3' | -56.4 | NC_001826.1 | + | 99996 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99097 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99197 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99297 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99397 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99497 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99597 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99697 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99896 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 98997 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 98897 | 0.68 | 0.760907 |
Target: 5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 118598 | 0.68 | 0.760907 |
Target: 5'- gUCAGCGGGGacccCcGACCCCcgGGGGCGGg -3' miRNA: 3'- -GGUUGCCUCc---GaCUGGGG--UUUCGCCg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 117691 | 0.74 | 0.433333 |
Target: 5'- cCCAcGCGaGAGGC-GGCCCCcucuGGGUGGCc -3' miRNA: 3'- -GGU-UGC-CUCCGaCUGGGGu---UUCGCCG- -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 118888 | 0.73 | 0.489255 |
Target: 5'- cCCGGCGGAGGggGuccaGCCCCcggcAGGGgGGCg -3' miRNA: 3'- -GGUUGCCUCCgaC----UGGGG----UUUCgCCG- -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 99779 | 0.7 | 0.644448 |
Target: 5'- cCCGGCGGgauggggggaaccggGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUUGCC---------------UCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 100778 | 0.7 | 0.644448 |
Target: 5'- cCCGGCGGgauggggggaaccggGGGacggGGCCCCGGAGCGa- -3' miRNA: 3'- -GGUUGCC---------------UCCga--CUGGGGUUUCGCcg -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 119091 | 0.69 | 0.681378 |
Target: 5'- cCCGA-GGAuGGCgcagggggGACCCCuGGGCaGGCa -3' miRNA: 3'- -GGUUgCCU-CCGa-------CUGGGGuUUCG-CCG- -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 118792 | 0.69 | 0.701691 |
Target: 5'- gCGGgGGAGGCUugugggGGCCCCGggcccggggaGGGgGGCc -3' miRNA: 3'- gGUUgCCUCCGA------CUGGGGU----------UUCgCCG- -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 97456 | 0.69 | 0.701691 |
Target: 5'- gCGAauGucuGGCgUGucACCCCGAGGCGGCc -3' miRNA: 3'- gGUUgcCu--CCG-AC--UGGGGUUUCGCCG- -5' |
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6137 | 3' | -56.4 | NC_001826.1 | + | 118666 | 0.69 | 0.721767 |
Target: 5'- gUAGCGG-GGC---CCCCGGAGgGGCu -3' miRNA: 3'- gGUUGCCuCCGacuGGGGUUUCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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