miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6139 3' -48.3 NC_001826.1 + 11359 0.68 0.987164
Target:  5'- --cAAGaGGAGCcugggAGCAGACAUUgguugUCUCCa -3'
miRNA:   3'- uauUUC-CCUUG-----UCGUCUGUAA-----GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 12547 0.71 0.942415
Target:  5'- uGUGGAGGGGACcuccCAGcCGUgugCCUCCa -3'
miRNA:   3'- -UAUUUCCCUUGuc--GUCuGUAa--GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 13549 0.68 0.990211
Target:  5'- cAUGuAGGGAcCGGCAGugAUggggUUCUCUg -3'
miRNA:   3'- -UAUuUCCCUuGUCGUCugUA----AGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 15316 0.66 0.998082
Target:  5'- --uAAGGGcuuugacACAGCacauGGugAUUCCUCUa -3'
miRNA:   3'- uauUUCCCu------UGUCG----UCugUAAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 16427 0.71 0.947238
Target:  5'- -gAAGGGGAGCAGaUGGACAgggaUUUUUCCc -3'
miRNA:   3'- uaUUUCCCUUGUC-GUCUGU----AAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 18986 0.69 0.973591
Target:  5'- -gGAAGGGAuACAGCcaAC-UUCCUCUg -3'
miRNA:   3'- uaUUUCCCU-UGUCGucUGuAAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 25044 0.69 0.978936
Target:  5'- --cAAGGGuaucaggacaAGgGGUAGACAggCCUCCa -3'
miRNA:   3'- uauUUCCC----------UUgUCGUCUGUaaGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 26599 0.68 0.987164
Target:  5'- gAUAAGGGGAuuuccaGGUAGAgGgUCUUCCu -3'
miRNA:   3'- -UAUUUCCCUug----UCGUCUgUaAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 44684 0.71 0.951786
Target:  5'- uGUGAuguGGGAugAGCAuGAUgauuuagcaauaAUUCCUCCc -3'
miRNA:   3'- -UAUUu--CCCUugUCGU-CUG------------UAAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 78108 1.1 0.008912
Target:  5'- gAUAAAGGGAACAGCAGACAUUCCUCCc -3'
miRNA:   3'- -UAUUUCCCUUGUCGUCUGUAAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 90671 0.69 0.978936
Target:  5'- ----uGGGGACuGGUuGGCAUugUCCUCCa -3'
miRNA:   3'- uauuuCCCUUG-UCGuCUGUA--AGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 97531 0.68 0.987164
Target:  5'- -aGAAGGGAAacgagAGUAGGCAcggUCCUUg -3'
miRNA:   3'- uaUUUCCCUUg----UCGUCUGUa--AGGAGg -5'
6139 3' -48.3 NC_001826.1 + 98075 0.78 0.618267
Target:  5'- -aGAAGGGGGCAcaccGCAGACGggUCUCCc -3'
miRNA:   3'- uaUUUCCCUUGU----CGUCUGUaaGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 98887 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 98987 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99087 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99187 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99287 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99387 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99487 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.