miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6139 3' -48.3 NC_001826.1 + 99986 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99087 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99187 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99287 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99387 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99487 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99587 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99687 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99886 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 98987 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 98887 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 25044 0.69 0.978936
Target:  5'- --cAAGGGuaucaggacaAGgGGUAGACAggCCUCCa -3'
miRNA:   3'- uauUUCCC----------UUgUCGUCUGUaaGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 98075 0.78 0.618267
Target:  5'- -aGAAGGGGGCAcaccGCAGACGggUCUCCc -3'
miRNA:   3'- uaUUUCCCUUGU----CGUCUGUaaGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 119104 0.71 0.930265
Target:  5'- -cAGGGGGGACcccugGGCAGGCAggcaccaacagcggcCCUCCg -3'
miRNA:   3'- uaUUUCCCUUG-----UCGUCUGUaa-------------GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 118915 0.71 0.937314
Target:  5'- -aGGGGGGcGCGGCGGGCcccgGUUCCcCCc -3'
miRNA:   3'- uaUUUCCCuUGUCGUCUG----UAAGGaGG- -5'
6139 3' -48.3 NC_001826.1 + 12547 0.71 0.942415
Target:  5'- uGUGGAGGGGACcuccCAGcCGUgugCCUCCa -3'
miRNA:   3'- -UAUUUCCCUUGuc--GUCuGUAa--GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 44684 0.71 0.951786
Target:  5'- uGUGAuguGGGAugAGCAuGAUgauuuagcaauaAUUCCUCCc -3'
miRNA:   3'- -UAUUu--CCCUugUCGU-CUG------------UAAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 99787 0.69 0.973591
Target:  5'- gAUGGGGGGAAcCGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUU-GUCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 100786 0.69 0.973591
Target:  5'- gAUGGGGGGAAcCGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUU-GUCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 18986 0.69 0.973591
Target:  5'- -gGAAGGGAuACAGCcaAC-UUCCUCUg -3'
miRNA:   3'- uaUUUCCCU-UGUCGucUGuAAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.