miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6139 5' -52.1 NC_001826.1 + 1221 0.66 0.971646
Target:  5'- gGGGAGGAAacacucCACGguagCUGAgCCAccaGGCa -3'
miRNA:   3'- aCCCUCCUU------GUGCa---GACU-GGUua-CUG- -5'
6139 5' -52.1 NC_001826.1 + 50546 0.66 0.971646
Target:  5'- aGGGuaauuGGAACACucucccCUGACuCGGUGAUa -3'
miRNA:   3'- aCCCu----CCUUGUGca----GACUG-GUUACUG- -5'
6139 5' -52.1 NC_001826.1 + 4443 0.67 0.9498
Target:  5'- aGGGAuGGGGaaaGCG-CUGAUCAcAUGGCa -3'
miRNA:   3'- aCCCU-CCUUg--UGCaGACUGGU-UACUG- -5'
6139 5' -52.1 NC_001826.1 + 112561 0.67 0.940541
Target:  5'- -uGGAuGGAGCAC--CUGACCuGUGGCa -3'
miRNA:   3'- acCCU-CCUUGUGcaGACUGGuUACUG- -5'
6139 5' -52.1 NC_001826.1 + 5852 0.68 0.917109
Target:  5'- gUGGGAauguuuuccugaguGGGAUAUGUCUucucGACCGgggGUGGCg -3'
miRNA:   3'- -ACCCU--------------CCUUGUGCAGA----CUGGU---UACUG- -5'
6139 5' -52.1 NC_001826.1 + 87642 0.69 0.871108
Target:  5'- uUGGGAGGGACGucccagaccUGUCUGGCUc--GGCc -3'
miRNA:   3'- -ACCCUCCUUGU---------GCAGACUGGuuaCUG- -5'
6139 5' -52.1 NC_001826.1 + 42748 0.7 0.863301
Target:  5'- aUGGGGGGGAUgaucuguaccaACaUCUGGCUAAUGGa -3'
miRNA:   3'- -ACCCUCCUUG-----------UGcAGACUGGUUACUg -5'
6139 5' -52.1 NC_001826.1 + 90837 0.7 0.838538
Target:  5'- cGuGGAGGGACGaaauUGUCUGGaugagCAAUGACa -3'
miRNA:   3'- aC-CCUCCUUGU----GCAGACUg----GUUACUG- -5'
6139 5' -52.1 NC_001826.1 + 79997 0.7 0.838538
Target:  5'- gGGGAugcuuaauGGGAUcUGUUUGGCCAAUGAUu -3'
miRNA:   3'- aCCCU--------CCUUGuGCAGACUGGUUACUG- -5'
6139 5' -52.1 NC_001826.1 + 57525 0.71 0.820989
Target:  5'- gGGGAGGuugGACA-GUCUGACCAuagaaGAUa -3'
miRNA:   3'- aCCCUCC---UUGUgCAGACUGGUua---CUG- -5'
6139 5' -52.1 NC_001826.1 + 118585 0.71 0.773991
Target:  5'- gGGGAGGGGCACGgucagCgggGACCcccGACc -3'
miRNA:   3'- aCCCUCCUUGUGCa----Ga--CUGGuuaCUG- -5'
6139 5' -52.1 NC_001826.1 + 78143 1.1 0.004257
Target:  5'- gUGGGAGGAACACGUCUGACCAAUGACu -3'
miRNA:   3'- -ACCCUCCUUGUGCAGACUGGUUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.