miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6140 3' -55.8 NC_001826.1 + 82652 1.08 0.001672
Target:  5'- aAAAUGAAGCAGCCUGCCAGCCAGCACa -3'
miRNA:   3'- -UUUACUUCGUCGGACGGUCGGUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 97826 0.7 0.529715
Target:  5'- --uUGgcGCugaaGGCCUGUCAGUUGGCACa -3'
miRNA:   3'- uuuACuuCG----UCGGACGGUCGGUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 26082 0.7 0.529715
Target:  5'- ---cGAuaGGCcaugucuCCUGCCGGCCGGCGCu -3'
miRNA:   3'- uuuaCU--UCGuc-----GGACGGUCGGUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 26130 0.7 0.582637
Target:  5'- ----uAGGCAGCCgcucGCCAGC-GGCACg -3'
miRNA:   3'- uuuacUUCGUCGGa---CGGUCGgUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 62143 0.68 0.658132
Target:  5'- -uAUGGAGUacGGCCUGCCAGUuaCAG-ACg -3'
miRNA:   3'- uuUACUUCG--UCGGACGGUCG--GUCgUG- -5'
6140 3' -55.8 NC_001826.1 + 99922 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100022 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100122 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100222 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100322 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100422 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99822 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99723 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99623 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99523 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99423 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99323 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99223 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99123 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99023 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.