Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6140 | 3' | -55.8 | NC_001826.1 | + | 15969 | 0.66 | 0.773009 |
Target: 5'- gAAAUGAuucAGgAGUUUgGCCAGCuCAGCAUa -3' miRNA: 3'- -UUUACU---UCgUCGGA-CGGUCG-GUCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 24159 | 0.66 | 0.811333 |
Target: 5'- cAGUGAAGCuGCC--CCAGaCAGCAUa -3' miRNA: 3'- uUUACUUCGuCGGacGGUCgGUCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 26082 | 0.7 | 0.529715 |
Target: 5'- ---cGAuaGGCcaugucuCCUGCCGGCCGGCGCu -3' miRNA: 3'- uuuaCU--UCGuc-----GGACGGUCGGUCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 26130 | 0.7 | 0.582637 |
Target: 5'- ----uAGGCAGCCgcucGCCAGC-GGCACg -3' miRNA: 3'- uuuacUUCGUCGGa---CGGUCGgUCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 62143 | 0.68 | 0.658132 |
Target: 5'- -uAUGGAGUacGGCCUGCCAGUuaCAG-ACg -3' miRNA: 3'- uuUACUUCG--UCGGACGGUCG--GUCgUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 68212 | 0.67 | 0.749914 |
Target: 5'- uAAAUGucuGCGGCCUGCCccuaagcgccuccaGGCCGuuGUGCa -3' miRNA: 3'- -UUUACuu-CGUCGGACGG--------------UCGGU--CGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 78981 | 0.67 | 0.742757 |
Target: 5'- --uUGAAGCAGCauacaaaaacCUGCCAGUCAcCAg -3' miRNA: 3'- uuuACUUCGUCG----------GACGGUCGGUcGUg -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 82652 | 1.08 | 0.001672 |
Target: 5'- aAAAUGAAGCAGCCUGCCAGCCAGCACa -3' miRNA: 3'- -UUUACUUCGUCGGACGGUCGGUCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 97826 | 0.7 | 0.529715 |
Target: 5'- --uUGgcGCugaaGGCCUGUCAGUUGGCACa -3' miRNA: 3'- uuuACuuCG----UCGGACGGUCGGUCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 98923 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99023 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99123 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99223 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99323 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99423 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99523 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99623 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99723 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99822 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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6140 | 3' | -55.8 | NC_001826.1 | + | 99922 | 0.67 | 0.722032 |
Target: 5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3' miRNA: 3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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