miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6141 3' -60.3 NC_001826.1 + 27637 0.66 0.693989
Target:  5'- -cGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- ucCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 81488 0.68 0.553547
Target:  5'- gAGGGccAGGCgGGGgCAgaguGACAGGUCUauGGg -3'
miRNA:   3'- -UCCC--UCCGgCUCgGU----CUGUCCAGA--CC- -5'
6141 3' -60.3 NC_001826.1 + 28049 0.68 0.5339
Target:  5'- cGGGAGG--GGGCCGGGaAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 28182 0.68 0.5339
Target:  5'- cGGGAGG--GGGCCGGGaAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 28131 0.68 0.5339
Target:  5'- cGGGAGG--GGGCCGGGaAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 87723 0.68 0.5339
Target:  5'- cGGGGAaugauGGCacauGGCCAGGCAGaGUCaGGg -3'
miRNA:   3'- -UCCCU-----CCGgc--UCGGUCUGUC-CAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27998 0.68 0.5339
Target:  5'- cGGGAGG--GGGCCGGGaAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 87641 0.69 0.504919
Target:  5'- uGGGAGGgaCGucCCAGACcuGUCUGGc -3'
miRNA:   3'- uCCCUCCg-GCucGGUCUGucCAGACC- -5'
6141 3' -60.3 NC_001826.1 + 116888 0.71 0.380462
Target:  5'- gGGGGcgaggaugaacAGGCCcaGGGUUgacuGGACGGGUCUGGa -3'
miRNA:   3'- -UCCC-----------UCCGG--CUCGG----UCUGUCCAGACC- -5'
6141 3' -60.3 NC_001826.1 + 27238 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27198 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27158 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27118 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27078 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27038 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 26998 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 26958 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 26918 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27278 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 118821 0.72 0.348847
Target:  5'- cGGGGAGGg-GGGCCGGGCGGGg--GGa -3'
miRNA:   3'- -UCCCUCCggCUCGGUCUGUCCagaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.