Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6141 | 5' | -58.4 | NC_001826.1 | + | 87518 | 1.09 | 0.001272 |
Target: 5'- cUCCCAAGCGUCACCCUCCCCAACCUGg -3' miRNA: 3'- -AGGGUUCGCAGUGGGAGGGGUUGGAC- -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27194 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27234 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27274 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27314 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27354 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27394 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27434 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27474 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27154 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27114 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27074 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 26795 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 26835 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 26875 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 26915 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 26954 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 26994 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27034 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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6141 | 5' | -58.4 | NC_001826.1 | + | 27514 | 0.75 | 0.259729 |
Target: 5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3' miRNA: 3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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