miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6141 5' -58.4 NC_001826.1 + 10293 0.7 0.514114
Target:  5'- cUCCCAuaugugacauaaaaaAGUGUgCACCUcccgaagucaagUCCCCAGCCUa -3'
miRNA:   3'- -AGGGU---------------UCGCA-GUGGG------------AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 16247 0.66 0.732363
Target:  5'- gUCCUAAGUGUCACCgUCUaCAaugucAUCUGg -3'
miRNA:   3'- -AGGGUUCGCAGUGGgAGGgGU-----UGGAC- -5'
6141 5' -58.4 NC_001826.1 + 24574 0.67 0.661899
Target:  5'- cUUCCAGGUggugagcugaGUCuagauaccucuACCCUCCCCAACUg- -3'
miRNA:   3'- -AGGGUUCG----------CAG-----------UGGGAGGGGUUGGac -5'
6141 5' -58.4 NC_001826.1 + 26755 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 26795 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 26835 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 26875 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 26915 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 26954 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 26994 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27034 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27074 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27114 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27154 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27194 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27234 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27274 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27314 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27354 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27394 0.75 0.259729
Target:  5'- cUCCCGAGCuGggGCCCggaUCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGUUGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.