miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6148 3' -61.9 NC_001826.1 + 118815 0.67 0.528227
Target:  5'- cGGgCCCGGGGAGggggGCcG-GGCGgGGGg -3'
miRNA:   3'- -CCgGGGCUCCUCa---CGaCgCUGCgCCU- -5'
6148 3' -61.9 NC_001826.1 + 100807 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99908 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100008 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100108 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100208 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100308 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100408 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100508 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100608 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99808 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99709 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 98909 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99109 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99209 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99309 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99409 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99509 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 99609 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5'
6148 3' -61.9 NC_001826.1 + 100708 0.69 0.419152
Target:  5'- gGGCCCCGgagcgaGGGAGcggGCUGCccGGCcCGGGg -3'
miRNA:   3'- -CCGGGGC------UCCUCa--CGACG--CUGcGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.