miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
619 5' -58.9 AC_000017.1 + 20455 1.12 0.000167
Target:  5'- uCCACCAACCCGGGAGCCACCACUCGCu -3'
miRNA:   3'- -GGUGGUUGGGCCCUCGGUGGUGAGCG- -5'
619 5' -58.9 AC_000017.1 + 16209 0.78 0.062601
Target:  5'- gCCGCCGACCCGGcacuGCCGCCcaACgCGCg -3'
miRNA:   3'- -GGUGGUUGGGCCcu--CGGUGG--UGaGCG- -5'
619 5' -58.9 AC_000017.1 + 16781 0.74 0.127287
Target:  5'- aCCACCGuagucuuuacGCCCGGuGAGCgCuCCACcCGCa -3'
miRNA:   3'- -GGUGGU----------UGGGCC-CUCG-GuGGUGaGCG- -5'
619 5' -58.9 AC_000017.1 + 11554 0.73 0.142197
Target:  5'- uUACCAGgUCGGcGGCCGCCACgugugCGCg -3'
miRNA:   3'- gGUGGUUgGGCCcUCGGUGGUGa----GCG- -5'
619 5' -58.9 AC_000017.1 + 16269 0.73 0.163073
Target:  5'- gCACCGGCCgaCGGGcGGCCaugcgaGCCGCUCGa -3'
miRNA:   3'- gGUGGUUGG--GCCC-UCGG------UGGUGAGCg -5'
619 5' -58.9 AC_000017.1 + 15726 0.71 0.196918
Target:  5'- cUCACaGAUCaCGGGAcGCUACCGCUgCGCa -3'
miRNA:   3'- -GGUGgUUGG-GCCCU-CGGUGGUGA-GCG- -5'
619 5' -58.9 AC_000017.1 + 4176 0.71 0.196918
Target:  5'- aCCGCUGGuCCCGGGc-CUACCGCgcgCGCa -3'
miRNA:   3'- -GGUGGUU-GGGCCCucGGUGGUGa--GCG- -5'
619 5' -58.9 AC_000017.1 + 18965 0.7 0.23066
Target:  5'- gCACCAGCCCGGG-GCUcaGgUACUCcgagGCg -3'
miRNA:   3'- gGUGGUUGGGCCCuCGG--UgGUGAG----CG- -5'
619 5' -58.9 AC_000017.1 + 24035 0.7 0.255119
Target:  5'- uCCACCAACCUGGaGGacgugucguccccGUCGCCG-UCGCc -3'
miRNA:   3'- -GGUGGUUGGGCC-CU-------------CGGUGGUgAGCG- -5'
619 5' -58.9 AC_000017.1 + 10241 0.69 0.262393
Target:  5'- aCCAUCAACaCGGGcGCaUACCAC-CGCu -3'
miRNA:   3'- -GGUGGUUGgGCCCuCG-GUGGUGaGCG- -5'
619 5' -58.9 AC_000017.1 + 12275 0.69 0.275351
Target:  5'- gCCGCCGacguugccagcgcGCgCGGGuGCCACCGC-CaGCc -3'
miRNA:   3'- -GGUGGU-------------UGgGCCCuCGGUGGUGaG-CG- -5'
619 5' -58.9 AC_000017.1 + 26016 0.69 0.283085
Target:  5'- cCCGCCcGCCCaaugcGGAGCuUACCGCcUGCg -3'
miRNA:   3'- -GGUGGuUGGGc----CCUCG-GUGGUGaGCG- -5'
619 5' -58.9 AC_000017.1 + 18329 0.69 0.290264
Target:  5'- cCCGCCcuCCCGuagaGGAGCCuCCAC-CGg -3'
miRNA:   3'- -GGUGGuuGGGC----CCUCGGuGGUGaGCg -5'
619 5' -58.9 AC_000017.1 + 808 0.68 0.3275
Target:  5'- uCCGCCGgcGCCCGguucuccGGAGCCGCCucacCUUucccgGCa -3'
miRNA:   3'- -GGUGGU--UGGGC-------CCUCGGUGGu---GAG-----CG- -5'
619 5' -58.9 AC_000017.1 + 6458 0.68 0.33633
Target:  5'- gCACCugguGCCCGacGAGCgCACCAC-CGUc -3'
miRNA:   3'- gGUGGu---UGGGCc-CUCG-GUGGUGaGCG- -5'
619 5' -58.9 AC_000017.1 + 10933 0.68 0.344508
Target:  5'- cCCuCCGGCUacaGGGAGCgaGCCACUuaaUGCu -3'
miRNA:   3'- -GGuGGUUGGg--CCCUCGg-UGGUGA---GCG- -5'
619 5' -58.9 AC_000017.1 + 9961 0.67 0.351989
Target:  5'- gCGCCGaugucaaaacgaaGCCUGGGgcauGGCCgACCGCcugCGCa -3'
miRNA:   3'- gGUGGU-------------UGGGCCC----UCGG-UGGUGa--GCG- -5'
619 5' -58.9 AC_000017.1 + 8657 0.67 0.352827
Target:  5'- cCUACC--UCCGGGGGCCcgcCCGCgucacCGCu -3'
miRNA:   3'- -GGUGGuuGGGCCCUCGGu--GGUGa----GCG- -5'
619 5' -58.9 AC_000017.1 + 8254 0.67 0.361288
Target:  5'- aCCACCAGCCaaacccgccaggCGaGGGGCuCAaauucCCACUCuGCu -3'
miRNA:   3'- -GGUGGUUGG------------GC-CCUCG-GU-----GGUGAG-CG- -5'
619 5' -58.9 AC_000017.1 + 3804 0.67 0.378628
Target:  5'- gCCGCCGcuucaGCCgCuGcAGCCACCGCcCGCg -3'
miRNA:   3'- -GGUGGU-----UGG-GcCcUCGGUGGUGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.