miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6203 5' -56.4 NC_001844.1 + 144882 0.69 0.736862
Target:  5'- gUCGGAUcAACuGCGCUGCCgGGcucaCCCCa -3'
miRNA:   3'- -AGCCUA-UUGuCGCGGUGGgUUc---GGGG- -5'
6203 5' -56.4 NC_001844.1 + 144547 0.67 0.85288
Target:  5'- cCGGGc-GCAGCcauGCC-CCaAGGCCCCa -3'
miRNA:   3'- aGCCUauUGUCG---CGGuGGgUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 144296 0.67 0.835984
Target:  5'- uUCGGGUAGaGGCGCgCaaacgcgGCCUcGGCCCUc -3'
miRNA:   3'- -AGCCUAUUgUCGCG-G-------UGGGuUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 143900 0.69 0.727048
Target:  5'- -aGGGccgccAGCAGCGCCGa--GAGCCCCc -3'
miRNA:   3'- agCCUa----UUGUCGCGGUgggUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 142861 0.73 0.534912
Target:  5'- cUGGGUGAUGGUccagGCCgagGCCCGGGCCCg -3'
miRNA:   3'- aGCCUAUUGUCG----CGG---UGGGUUCGGGg -5'
6203 5' -56.4 NC_001844.1 + 142335 0.72 0.585104
Target:  5'- cCGGGUAGCuAGcCGUgACCCcGGCCgCCg -3'
miRNA:   3'- aGCCUAUUG-UC-GCGgUGGGuUCGG-GG- -5'
6203 5' -56.4 NC_001844.1 + 142214 0.68 0.811324
Target:  5'- gCGGucGUAGCGGCggcucaugGCCACCgAGGCUgCCg -3'
miRNA:   3'- aGCC--UAUUGUCG--------CGGUGGgUUCGG-GG- -5'
6203 5' -56.4 NC_001844.1 + 141775 0.68 0.793509
Target:  5'- cCGGAUGgugugaGCAGCgGCuCGCgcuggcagguuCCGAGCCCUg -3'
miRNA:   3'- aGCCUAU------UGUCG-CG-GUG-----------GGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 141634 0.75 0.404681
Target:  5'- cUUGGGUGGCAGCGCUugCgcuuaGAGgCCCg -3'
miRNA:   3'- -AGCCUAUUGUCGCGGugGg----UUCgGGG- -5'
6203 5' -56.4 NC_001844.1 + 138692 0.67 0.834331
Target:  5'- gUUGGGUAgguugcuagcuggcACAGUGCCAUgCGcGCuCCCg -3'
miRNA:   3'- -AGCCUAU--------------UGUCGCGGUGgGUuCG-GGG- -5'
6203 5' -56.4 NC_001844.1 + 137935 0.73 0.515246
Target:  5'- gCGGGg---GGCGCCGUCCAccAGCCCCa -3'
miRNA:   3'- aGCCUauugUCGCGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 136648 0.68 0.802494
Target:  5'- cCGGu---CAGUG-CGCCUAGGCUCCa -3'
miRNA:   3'- aGCCuauuGUCGCgGUGGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 135220 0.68 0.764773
Target:  5'- -gGGGUGACAcucaGCCGCgCAaacaguaAGCCCCg -3'
miRNA:   3'- agCCUAUUGUcg--CGGUGgGU-------UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 122024 0.77 0.303235
Target:  5'- aUCGGcccccgccauGUccAGCAGCGCCACCCAGuagcGCUCCg -3'
miRNA:   3'- -AGCC----------UA--UUGUCGCGGUGGGUU----CGGGG- -5'
6203 5' -56.4 NC_001844.1 + 121195 0.7 0.691108
Target:  5'- gCGGGggagaucuucuguAUAGCGCuCGCCCAA-CCCCa -3'
miRNA:   3'- aGCCUau-----------UGUCGCG-GUGGGUUcGGGG- -5'
6203 5' -56.4 NC_001844.1 + 120358 0.67 0.836807
Target:  5'- gCGGAgcGCAGaaCGCU-CCCG-GCCCCc -3'
miRNA:   3'- aGCCUauUGUC--GCGGuGGGUuCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 120283 0.68 0.78438
Target:  5'- cCGGAUGGuCAGaGCCGCCgGgaAGCCUg -3'
miRNA:   3'- aGCCUAUU-GUCgCGGUGGgU--UCGGGg -5'
6203 5' -56.4 NC_001844.1 + 116481 0.67 0.860619
Target:  5'- cCGGGgccucuaAGCGcaagcGCuGCCACCCAAGaCCCa -3'
miRNA:   3'- aGCCUa------UUGU-----CG-CGGUGGGUUCgGGG- -5'
6203 5' -56.4 NC_001844.1 + 116381 0.67 0.819991
Target:  5'- gUUGGAcaugAACuGCuCCuCUCAGGCCCCa -3'
miRNA:   3'- -AGCCUa---UUGuCGcGGuGGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 115768 0.69 0.736862
Target:  5'- -gGGGUcACGGCuaGCUACCC-GGCCCa -3'
miRNA:   3'- agCCUAuUGUCG--CGGUGGGuUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.