miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6203 5' -56.4 NC_001844.1 + 5420 0.68 0.793509
Target:  5'- gUGGugaguuuuGCAGCGUCGCCUAAaaaCCCCa -3'
miRNA:   3'- aGCCuau-----UGUCGCGGUGGGUUc--GGGG- -5'
6203 5' -56.4 NC_001844.1 + 13081 0.68 0.811324
Target:  5'- aCcGAUGGgGGCGaCCGCUgcAGCCCCa -3'
miRNA:   3'- aGcCUAUUgUCGC-GGUGGguUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 13690 0.71 0.646357
Target:  5'- gUGGGUAugGGCagGCUA-UCGAGCCCCg -3'
miRNA:   3'- aGCCUAUugUCG--CGGUgGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 15937 0.68 0.802494
Target:  5'- cCGGGUGgugaAUAGCGCgCACCCAugacugguaAGCgCUg -3'
miRNA:   3'- aGCCUAU----UGUCGCG-GUGGGU---------UCGgGG- -5'
6203 5' -56.4 NC_001844.1 + 38581 1.13 0.001387
Target:  5'- uUCGGAUAACAGCGCCACCCAAGCCCCa -3'
miRNA:   3'- -AGCCUAUUGUCGCGGUGGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 46956 0.68 0.78438
Target:  5'- aUGGuuGUGuugcguCAGCGCCAUCUAaaAGCCCUu -3'
miRNA:   3'- aGCC--UAUu-----GUCGCGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 49793 0.72 0.542853
Target:  5'- cUGGAgcuguaucucuaGACAGCGCCGCCUuguguguAGCCCa -3'
miRNA:   3'- aGCCUa-----------UUGUCGCGGUGGGu------UCGGGg -5'
6203 5' -56.4 NC_001844.1 + 51037 0.7 0.707185
Target:  5'- ----cUAGCaAGCGCUcgGCCUggGCCCCa -3'
miRNA:   3'- agccuAUUG-UCGCGG--UGGGuuCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 56018 0.69 0.746584
Target:  5'- aCGcGA-AGC-GCGaCCGCCgCGGGCCCCa -3'
miRNA:   3'- aGC-CUaUUGuCGC-GGUGG-GUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 60746 0.68 0.802494
Target:  5'- gCGGuuaucuaugauuGUAcCGGCGCCACUCAccGCCUCg -3'
miRNA:   3'- aGCC------------UAUuGUCGCGGUGGGUu-CGGGG- -5'
6203 5' -56.4 NC_001844.1 + 63568 0.68 0.792603
Target:  5'- cUGGuu-ACGGCGCUguaucucgcuguaAUCCAauAGCCCCg -3'
miRNA:   3'- aGCCuauUGUCGCGG-------------UGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 73669 0.68 0.765719
Target:  5'- -----cAGCAGCccucGCCGCCCAgcAGCCCUc -3'
miRNA:   3'- agccuaUUGUCG----CGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 73758 0.68 0.765719
Target:  5'- -----cAGCAGCccucGCCGCCCAgcAGCCCUc -3'
miRNA:   3'- agccuaUUGUCG----CGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 78850 0.67 0.836807
Target:  5'- gCGGggGGUAGgGUUACgUAAGCCCCa -3'
miRNA:   3'- aGCCuaUUGUCgCGGUGgGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 101000 0.67 0.860619
Target:  5'- gCGGAUuuGCGGCGaaguguguaaCugCCAcGCCCUa -3'
miRNA:   3'- aGCCUAu-UGUCGCg---------GugGGUuCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 102013 0.66 0.896119
Target:  5'- uUCGGAggagguaGACGGCGUUAuuuucuccUCUGAGCCCUc -3'
miRNA:   3'- -AGCCUa------UUGUCGCGGU--------GGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113230 0.66 0.889462
Target:  5'- -gGGGUGagcccgGCAGCGCaguugAUCCGAcgcGCCCCc -3'
miRNA:   3'- agCCUAU------UGUCGCGg----UGGGUU---CGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113311 0.67 0.860619
Target:  5'- cUGGA--GCuGUGCCuuCCCGAGUCCg -3'
miRNA:   3'- aGCCUauUGuCGCGGu-GGGUUCGGGg -5'
6203 5' -56.4 NC_001844.1 + 113398 0.7 0.707185
Target:  5'- aCGGAggcuCcuCGCCG-CCGAGCCCCu -3'
miRNA:   3'- aGCCUauu-GucGCGGUgGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113887 0.69 0.736862
Target:  5'- nCGGG----AGCGCCACCUcAGCCgCg -3'
miRNA:   3'- aGCCUauugUCGCGGUGGGuUCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.