Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6203 | 5' | -56.4 | NC_001844.1 | + | 113915 | 0.73 | 0.515246 |
Target: 5'- cUCGGGUcGCcuGCGCCGuuCGcuGGCCCCg -3' miRNA: 3'- -AGCCUAuUGu-CGCGGUggGU--UCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 114781 | 0.78 | 0.263453 |
Target: 5'- gCGGGaAGCGGCGCU--CCGAGCCCCu -3' miRNA: 3'- aGCCUaUUGUCGCGGugGGUUCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 114976 | 0.66 | 0.868153 |
Target: 5'- gCGGGgggccGACAaccugcucccGgGCCACCCAGacccaggcucGCCCCu -3' miRNA: 3'- aGCCUa----UUGU----------CgCGGUGGGUU----------CGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 115265 | 0.66 | 0.868153 |
Target: 5'- gCGGA-GGgAGC-CCggGCCCGGGCCUCg -3' miRNA: 3'- aGCCUaUUgUCGcGG--UGGGUUCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 115768 | 0.69 | 0.736862 |
Target: 5'- -gGGGUcACGGCuaGCUACCC-GGCCCa -3' miRNA: 3'- agCCUAuUGUCG--CGGUGGGuUCGGGg -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 116381 | 0.67 | 0.819991 |
Target: 5'- gUUGGAcaugAACuGCuCCuCUCAGGCCCCa -3' miRNA: 3'- -AGCCUa---UUGuCGcGGuGGGUUCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 116481 | 0.67 | 0.860619 |
Target: 5'- cCGGGgccucuaAGCGcaagcGCuGCCACCCAAGaCCCa -3' miRNA: 3'- aGCCUa------UUGU-----CG-CGGUGGGUUCgGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 120283 | 0.68 | 0.78438 |
Target: 5'- cCGGAUGGuCAGaGCCGCCgGgaAGCCUg -3' miRNA: 3'- aGCCUAUU-GUCgCGGUGGgU--UCGGGg -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 120358 | 0.67 | 0.836807 |
Target: 5'- gCGGAgcGCAGaaCGCU-CCCG-GCCCCc -3' miRNA: 3'- aGCCUauUGUC--GCGGuGGGUuCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 121195 | 0.7 | 0.691108 |
Target: 5'- gCGGGggagaucuucuguAUAGCGCuCGCCCAA-CCCCa -3' miRNA: 3'- aGCCUau-----------UGUCGCG-GUGGGUUcGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 122024 | 0.77 | 0.303235 |
Target: 5'- aUCGGcccccgccauGUccAGCAGCGCCACCCAGuagcGCUCCg -3' miRNA: 3'- -AGCC----------UA--UUGUCGCGGUGGGUU----CGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 135220 | 0.68 | 0.764773 |
Target: 5'- -gGGGUGACAcucaGCCGCgCAaacaguaAGCCCCg -3' miRNA: 3'- agCCUAUUGUcg--CGGUGgGU-------UCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 136648 | 0.68 | 0.802494 |
Target: 5'- cCGGu---CAGUG-CGCCUAGGCUCCa -3' miRNA: 3'- aGCCuauuGUCGCgGUGGGUUCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 137935 | 0.73 | 0.515246 |
Target: 5'- gCGGGg---GGCGCCGUCCAccAGCCCCa -3' miRNA: 3'- aGCCUauugUCGCGGUGGGU--UCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 138692 | 0.67 | 0.834331 |
Target: 5'- gUUGGGUAgguugcuagcuggcACAGUGCCAUgCGcGCuCCCg -3' miRNA: 3'- -AGCCUAU--------------UGUCGCGGUGgGUuCG-GGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 141634 | 0.75 | 0.404681 |
Target: 5'- cUUGGGUGGCAGCGCUugCgcuuaGAGgCCCg -3' miRNA: 3'- -AGCCUAUUGUCGCGGugGg----UUCgGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 141775 | 0.68 | 0.793509 |
Target: 5'- cCGGAUGgugugaGCAGCgGCuCGCgcuggcagguuCCGAGCCCUg -3' miRNA: 3'- aGCCUAU------UGUCG-CG-GUG-----------GGUUCGGGG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 142214 | 0.68 | 0.811324 |
Target: 5'- gCGGucGUAGCGGCggcucaugGCCACCgAGGCUgCCg -3' miRNA: 3'- aGCC--UAUUGUCG--------CGGUGGgUUCGG-GG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 142335 | 0.72 | 0.585104 |
Target: 5'- cCGGGUAGCuAGcCGUgACCCcGGCCgCCg -3' miRNA: 3'- aGCCUAUUG-UC-GCGgUGGGuUCGG-GG- -5' |
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6203 | 5' | -56.4 | NC_001844.1 | + | 142861 | 0.73 | 0.534912 |
Target: 5'- cUGGGUGAUGGUccagGCCgagGCCCGGGCCCg -3' miRNA: 3'- aGCCUAUUGUCG----CGG---UGGGUUCGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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