miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6203 5' -56.4 NC_001844.1 + 63568 0.68 0.792603
Target:  5'- cUGGuu-ACGGCGCUguaucucgcuguaAUCCAauAGCCCCg -3'
miRNA:   3'- aGCCuauUGUCGCGG-------------UGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 46956 0.68 0.78438
Target:  5'- aUGGuuGUGuugcguCAGCGCCAUCUAaaAGCCCUu -3'
miRNA:   3'- aGCC--UAUu-----GUCGCGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 120283 0.68 0.78438
Target:  5'- cCGGAUGGuCAGaGCCGCCgGgaAGCCUg -3'
miRNA:   3'- aGCCUAUU-GUCgCGGUGGgU--UCGGGg -5'
6203 5' -56.4 NC_001844.1 + 73669 0.68 0.765719
Target:  5'- -----cAGCAGCccucGCCGCCCAgcAGCCCUc -3'
miRNA:   3'- agccuaUUGUCG----CGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 73758 0.68 0.765719
Target:  5'- -----cAGCAGCccucGCCGCCCAgcAGCCCUc -3'
miRNA:   3'- agccuaUUGUCG----CGGUGGGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 135220 0.68 0.764773
Target:  5'- -gGGGUGACAcucaGCCGCgCAaacaguaAGCCCCg -3'
miRNA:   3'- agCCUAUUGUcg--CGGUGgGU-------UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 56018 0.69 0.746584
Target:  5'- aCGcGA-AGC-GCGaCCGCCgCGGGCCCCa -3'
miRNA:   3'- aGC-CUaUUGuCGC-GGUGG-GUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113887 0.69 0.736862
Target:  5'- nCGGG----AGCGCCACCUcAGCCgCg -3'
miRNA:   3'- aGCCUauugUCGCGGUGGGuUCGGgG- -5'
6203 5' -56.4 NC_001844.1 + 144882 0.69 0.736862
Target:  5'- gUCGGAUcAACuGCGCUGCCgGGcucaCCCCa -3'
miRNA:   3'- -AGCCUA-UUGuCGCGGUGGgUUc---GGGG- -5'
6203 5' -56.4 NC_001844.1 + 115768 0.69 0.736862
Target:  5'- -gGGGUcACGGCuaGCUACCC-GGCCCa -3'
miRNA:   3'- agCCUAuUGUCG--CGGUGGGuUCGGGg -5'
6203 5' -56.4 NC_001844.1 + 143900 0.69 0.727048
Target:  5'- -aGGGccgccAGCAGCGCCGa--GAGCCCCc -3'
miRNA:   3'- agCCUa----UUGUCGCGGUgggUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 51037 0.7 0.707185
Target:  5'- ----cUAGCaAGCGCUcgGCCUggGCCCCa -3'
miRNA:   3'- agccuAUUG-UCGCGG--UGGGuuCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113398 0.7 0.707185
Target:  5'- aCGGAggcuCcuCGCCG-CCGAGCCCCu -3'
miRNA:   3'- aGCCUauu-GucGCGGUgGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 121195 0.7 0.691108
Target:  5'- gCGGGggagaucuucuguAUAGCGCuCGCCCAA-CCCCa -3'
miRNA:   3'- aGCCUau-----------UGUCGCG-GUGGGUUcGGGG- -5'
6203 5' -56.4 NC_001844.1 + 13690 0.71 0.646357
Target:  5'- gUGGGUAugGGCagGCUA-UCGAGCCCCg -3'
miRNA:   3'- aGCCUAUugUCG--CGGUgGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 142335 0.72 0.585104
Target:  5'- cCGGGUAGCuAGcCGUgACCCcGGCCgCCg -3'
miRNA:   3'- aGCCUAUUG-UC-GCGgUGGGuUCGG-GG- -5'
6203 5' -56.4 NC_001844.1 + 49793 0.72 0.542853
Target:  5'- cUGGAgcuguaucucuaGACAGCGCCGCCUuguguguAGCCCa -3'
miRNA:   3'- aGCCUa-----------UUGUCGCGGUGGGu------UCGGGg -5'
6203 5' -56.4 NC_001844.1 + 142861 0.73 0.534912
Target:  5'- cUGGGUGAUGGUccagGCCgagGCCCGGGCCCg -3'
miRNA:   3'- aGCCUAUUGUCG----CGG---UGGGUUCGGGg -5'
6203 5' -56.4 NC_001844.1 + 113915 0.73 0.515246
Target:  5'- cUCGGGUcGCcuGCGCCGuuCGcuGGCCCCg -3'
miRNA:   3'- -AGCCUAuUGu-CGCGGUggGU--UCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 137935 0.73 0.515246
Target:  5'- gCGGGg---GGCGCCGUCCAccAGCCCCa -3'
miRNA:   3'- aGCCUauugUCGCGGUGGGU--UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.