miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6206 3' -54 NC_001844.1 + 12707 0.66 0.959002
Target:  5'- cGGUGCCgCCGcacGAGUAgcuGGuCGCGCugGu -3'
miRNA:   3'- cCCGCGGgGGU---UUUAU---UC-GCGUGugC- -5'
6206 3' -54 NC_001844.1 + 107528 0.66 0.959002
Target:  5'- gGGGCuCCCCCAcAA-AAGCGaaaGCGg -3'
miRNA:   3'- -CCCGcGGGGGUuUUaUUCGCgugUGC- -5'
6206 3' -54 NC_001844.1 + 54777 0.66 0.953592
Target:  5'- -aGCGCaCCCCAAAAguguacugugauGGCGCAgagUACGa -3'
miRNA:   3'- ccCGCG-GGGGUUUUau----------UCGCGU---GUGC- -5'
6206 3' -54 NC_001844.1 + 13891 0.66 0.950714
Target:  5'- -aGCGCUgCCGuacAGGUAaugcaauAGCGCACACa -3'
miRNA:   3'- ccCGCGGgGGU---UUUAU-------UCGCGUGUGc -5'
6206 3' -54 NC_001844.1 + 22837 0.66 0.947283
Target:  5'- gGGGCGUacuuggggcuuuguaCCUuc-GUAAGCGCGCAaCGg -3'
miRNA:   3'- -CCCGCGg--------------GGGuuuUAUUCGCGUGU-GC- -5'
6206 3' -54 NC_001844.1 + 142726 0.66 0.946843
Target:  5'- aGGGUcagaGUCCCCGAGu--AGCcugGCACGCu -3'
miRNA:   3'- -CCCG----CGGGGGUUUuauUCG---CGUGUGc -5'
6206 3' -54 NC_001844.1 + 19618 0.66 0.946843
Target:  5'- uGGGCGaCCCgCGcGAcuAGgGCGCAUGu -3'
miRNA:   3'- -CCCGC-GGGgGUuUUauUCgCGUGUGC- -5'
6206 3' -54 NC_001844.1 + 113598 0.67 0.932519
Target:  5'- aGGGCGCagCCCA----GAGCcacCGCGCGg -3'
miRNA:   3'- -CCCGCGg-GGGUuuuaUUCGc--GUGUGC- -5'
6206 3' -54 NC_001844.1 + 106273 0.67 0.927253
Target:  5'- aGGCGCCaaugCCCGuc-UGAGCGCgugguGCGCa -3'
miRNA:   3'- cCCGCGG----GGGUuuuAUUCGCG-----UGUGc -5'
6206 3' -54 NC_001844.1 + 113331 0.67 0.92174
Target:  5'- cGGU-CCUCCAc-AUGGGCGCGCugGa -3'
miRNA:   3'- cCCGcGGGGGUuuUAUUCGCGUGugC- -5'
6206 3' -54 NC_001844.1 + 47430 0.67 0.91598
Target:  5'- cGGCGCCcuacuCCCAAGc--GGUGCGCAUc -3'
miRNA:   3'- cCCGCGG-----GGGUUUuauUCGCGUGUGc -5'
6206 3' -54 NC_001844.1 + 144546 0.67 0.912407
Target:  5'- cGGGCGCagccaugccccaaggCCCCAucGGUuGGC-CGCGCGg -3'
miRNA:   3'- -CCCGCG---------------GGGGUu-UUAuUCGcGUGUGC- -5'
6206 3' -54 NC_001844.1 + 144770 0.67 0.909976
Target:  5'- -cGCGCCCauguggaggaCCGAGGUcGAGCGCugACc -3'
miRNA:   3'- ccCGCGGG----------GGUUUUA-UUCGCGugUGc -5'
6206 3' -54 NC_001844.1 + 112527 0.68 0.883546
Target:  5'- --aCGCCCCCuauuuGAAUGAGgGCcCGCGu -3'
miRNA:   3'- cccGCGGGGGu----UUUAUUCgCGuGUGC- -5'
6206 3' -54 NC_001844.1 + 67167 0.69 0.868935
Target:  5'- -aGCGCCUauaaaCGAAGUGcuAGcCGCACACGa -3'
miRNA:   3'- ccCGCGGGg----GUUUUAU--UC-GCGUGUGC- -5'
6206 3' -54 NC_001844.1 + 101325 0.69 0.868935
Target:  5'- cGGGCGCaaccguacaCCCAAAGUuguGGCGUAaGCu -3'
miRNA:   3'- -CCCGCGg--------GGGUUUUAu--UCGCGUgUGc -5'
6206 3' -54 NC_001844.1 + 120159 0.69 0.864378
Target:  5'- cGGCGCCCCCcgcuGUGAcaugcggcaggauccGuCGCACGCc -3'
miRNA:   3'- cCCGCGGGGGuuu-UAUU---------------C-GCGUGUGc -5'
6206 3' -54 NC_001844.1 + 141386 0.69 0.861297
Target:  5'- uGGUGCCCCUucucUGAGCGUcCGCu -3'
miRNA:   3'- cCCGCGGGGGuuuuAUUCGCGuGUGc -5'
6206 3' -54 NC_001844.1 + 142437 0.69 0.861297
Target:  5'- -uGCGCCguggCCCGAGGgccGCGCACACc -3'
miRNA:   3'- ccCGCGG----GGGUUUUauuCGCGUGUGc -5'
6206 3' -54 NC_001844.1 + 142140 0.69 0.853446
Target:  5'- uGGCGUCCCCGAuGUGGG-GCAgGgGg -3'
miRNA:   3'- cCCGCGGGGGUUuUAUUCgCGUgUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.