miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6210 3' -53.5 NC_001844.1 + 67189 1.11 0.003253
Target:  5'- aGAACCGACGCAAAACUGCGCCAGCGCc -3'
miRNA:   3'- -CUUGGCUGCGUUUUGACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 35728 0.76 0.498865
Target:  5'- cGAAUCGACGUuAAAUcuaUGUGUCAGCGCc -3'
miRNA:   3'- -CUUGGCUGCGuUUUG---ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 60716 0.73 0.663758
Target:  5'- -cACCGccuCGCAAAACccGCGuCUAGCGCa -3'
miRNA:   3'- cuUGGCu--GCGUUUUGa-CGC-GGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 101193 0.71 0.74563
Target:  5'- aGGCUGugGUuGAACUGgcgagguguacCGCCAGCGUg -3'
miRNA:   3'- cUUGGCugCGuUUUGAC-----------GCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 113570 0.71 0.755498
Target:  5'- cAACCGAUggggccuugggGCAugGCUGCGCCcGGUGUa -3'
miRNA:   3'- cUUGGCUG-----------CGUuuUGACGCGG-UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 21171 0.71 0.755498
Target:  5'- -cGCCGuuacuUGCGGGGCcgcaGCGCUAGCGCu -3'
miRNA:   3'- cuUGGCu----GCGUUUUGa---CGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 34494 0.7 0.838019
Target:  5'- uAAUUGGCGCuAAAACuUGCGCUGGUGUu -3'
miRNA:   3'- cUUGGCUGCG-UUUUG-ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 70360 0.7 0.838019
Target:  5'- cAACCGuCGCGccAAACU-CGCCcagAGCGCa -3'
miRNA:   3'- cUUGGCuGCGU--UUUGAcGCGG---UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 121729 0.69 0.846322
Target:  5'- cGGCCGAauaguuCGCAGAACaUGCGgUAcGCGCg -3'
miRNA:   3'- cUUGGCU------GCGUUUUG-ACGCgGU-CGCG- -5'
6210 3' -53.5 NC_001844.1 + 26424 0.69 0.846322
Target:  5'- aGAGCCGguacgaaagGCGUGGAGCgccaucaagUGCGCucCAGCGCg -3'
miRNA:   3'- -CUUGGC---------UGCGUUUUG---------ACGCG--GUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 119431 0.69 0.854419
Target:  5'- gGGAgCG-CGCAuggcACUGUGCCAGCuaGCa -3'
miRNA:   3'- -CUUgGCuGCGUuu--UGACGCGGUCG--CG- -5'
6210 3' -53.5 NC_001844.1 + 115340 0.69 0.862306
Target:  5'- --cCCGACGa---GCUGCGCCucgcgguccGCGCg -3'
miRNA:   3'- cuuGGCUGCguuuUGACGCGGu--------CGCG- -5'
6210 3' -53.5 NC_001844.1 + 88803 0.68 0.884636
Target:  5'- -uGCCuccACGC---GCUGCGCgAGCGCc -3'
miRNA:   3'- cuUGGc--UGCGuuuUGACGCGgUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 68436 0.68 0.902934
Target:  5'- uGGCCGACGCccuggcagcccuggAAGACgccGCGCguGCuGCa -3'
miRNA:   3'- cUUGGCUGCG--------------UUUUGa--CGCGguCG-CG- -5'
6210 3' -53.5 NC_001844.1 + 137749 0.68 0.910498
Target:  5'- gGGGCCGGgaGCGuu-CUGCGCUccgccguGGCGCc -3'
miRNA:   3'- -CUUGGCUg-CGUuuuGACGCGG-------UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 136567 0.68 0.911112
Target:  5'- aGAACCGG-GgGAGACUGCGgaGGCGg -3'
miRNA:   3'- -CUUGGCUgCgUUUUGACGCggUCGCg -5'
6210 3' -53.5 NC_001844.1 + 54067 0.68 0.911112
Target:  5'- gGAACCaACGgAGAgcguguucaACUGCGCCAGguagaGCg -3'
miRNA:   3'- -CUUGGcUGCgUUU---------UGACGCGGUCg----CG- -5'
6210 3' -53.5 NC_001844.1 + 58801 0.67 0.922874
Target:  5'- cGGCgGGCGCAGAACUcGagGCCGGCc- -3'
miRNA:   3'- cUUGgCUGCGUUUUGA-Cg-CGGUCGcg -5'
6210 3' -53.5 NC_001844.1 + 28292 0.67 0.922874
Target:  5'- uGACCucaagGACGUugcuAAACUcGCGCCAGCcgaGCg -3'
miRNA:   3'- cUUGG-----CUGCGu---UUUGA-CGCGGUCG---CG- -5'
6210 3' -53.5 NC_001844.1 + 137344 0.67 0.922874
Target:  5'- --cCCGAgG-AAGAgaGCGCCAGCaGCg -3'
miRNA:   3'- cuuGGCUgCgUUUUgaCGCGGUCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.