miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6210 3' -53.5 NC_001844.1 + 4535 0.66 0.952167
Target:  5'- cAACUcuCGCAGAGCuaUGCGaccaCCAGCGCc -3'
miRNA:   3'- cUUGGcuGCGUUUUG--ACGC----GGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 10183 0.67 0.933634
Target:  5'- -uGCUGGCaaaaguGCAuuAACUGCaGCCAGgGCg -3'
miRNA:   3'- cuUGGCUG------CGUu-UUGACG-CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 15336 0.66 0.957734
Target:  5'- aAAUCaGCGCGAGaccuuggugcuugugGCUGCGCgGGgGCa -3'
miRNA:   3'- cUUGGcUGCGUUU---------------UGACGCGgUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 21171 0.71 0.755498
Target:  5'- -cGCCGuuacuUGCGGGGCcgcaGCGCUAGCGCu -3'
miRNA:   3'- cuUGGCu----GCGUUUUGa---CGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 26424 0.69 0.846322
Target:  5'- aGAGCCGguacgaaagGCGUGGAGCgccaucaagUGCGCucCAGCGCg -3'
miRNA:   3'- -CUUGGC---------UGCGUUUUG---------ACGCG--GUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 28292 0.67 0.922874
Target:  5'- uGACCucaagGACGUugcuAAACUcGCGCCAGCcgaGCg -3'
miRNA:   3'- cUUGG-----CUGCGu---UUUGA-CGCGGUCG---CG- -5'
6210 3' -53.5 NC_001844.1 + 34494 0.7 0.838019
Target:  5'- uAAUUGGCGCuAAAACuUGCGCUGGUGUu -3'
miRNA:   3'- cUUGGCUGCG-UUUUG-ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 35728 0.76 0.498865
Target:  5'- cGAAUCGACGUuAAAUcuaUGUGUCAGCGCc -3'
miRNA:   3'- -CUUGGCUGCGuUUUG---ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 44343 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44397 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44451 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44505 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44559 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44613 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44667 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44721 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44775 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44828 0.66 0.956191
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 46971 0.67 0.92838
Target:  5'- gGAACUG-C-CAAAACuaugguuguguUGCGUCAGCGCc -3'
miRNA:   3'- -CUUGGCuGcGUUUUG-----------ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 54067 0.68 0.911112
Target:  5'- gGAACCaACGgAGAgcguguucaACUGCGCCAGguagaGCg -3'
miRNA:   3'- -CUUGGcUGCgUUU---------UGACGCGGUCg----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.