miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6210 3' -53.5 NC_001844.1 + 57093 0.67 0.92838
Target:  5'- aGGCCGA-GCAGgugccGGCaUGaGCCAGCGCu -3'
miRNA:   3'- cUUGGCUgCGUU-----UUG-ACgCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 58801 0.67 0.922874
Target:  5'- cGGCgGGCGCAGAACUcGagGCCGGCc- -3'
miRNA:   3'- cUUGgCUGCGUUUUGA-Cg-CGGUCGcg -5'
6210 3' -53.5 NC_001844.1 + 60716 0.73 0.663758
Target:  5'- -cACCGccuCGCAAAACccGCGuCUAGCGCa -3'
miRNA:   3'- cuUGGCu--GCGUUUUGa-CGC-GGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 61529 0.66 0.963533
Target:  5'- uGggUUGACGCGGGaguACUGgGCUgagaacuuGGCGUg -3'
miRNA:   3'- -CuuGGCUGCGUUU---UGACgCGG--------UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 64101 0.66 0.956191
Target:  5'- cGGACCG-CGC----CUGCGC-AGUGCg -3'
miRNA:   3'- -CUUGGCuGCGuuuuGACGCGgUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 67189 1.11 0.003253
Target:  5'- aGAACCGACGCAAAACUGCGCCAGCGCc -3'
miRNA:   3'- -CUUGGCUGCGUUUUGACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 68436 0.68 0.902934
Target:  5'- uGGCCGACGCccuggcagcccuggAAGACgccGCGCguGCuGCa -3'
miRNA:   3'- cUUGGCUGCG--------------UUUUGa--CGCGguCG-CG- -5'
6210 3' -53.5 NC_001844.1 + 70360 0.7 0.838019
Target:  5'- cAACCGuCGCGccAAACU-CGCCcagAGCGCa -3'
miRNA:   3'- cUUGGCuGCGU--UUUGAcGCGG---UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 83406 0.67 0.938639
Target:  5'- gGAACCGGCGU--GGCUGUaGUUGGcCGCu -3'
miRNA:   3'- -CUUGGCUGCGuuUUGACG-CGGUC-GCG- -5'
6210 3' -53.5 NC_001844.1 + 88340 0.66 0.959978
Target:  5'- gGggUCGGaacguUGCAcgacuGCUGCGaaaCAGCGCa -3'
miRNA:   3'- -CuuGGCU-----GCGUuu---UGACGCg--GUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 88803 0.68 0.884636
Target:  5'- -uGCCuccACGC---GCUGCGCgAGCGCc -3'
miRNA:   3'- cuUGGc--UGCGuuuUGACGCGgUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 101193 0.71 0.74563
Target:  5'- aGGCUGugGUuGAACUGgcgagguguacCGCCAGCGUg -3'
miRNA:   3'- cUUGGCugCGuUUUGAC-----------GCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 110895 0.67 0.943394
Target:  5'- aGGCCa--GCA--GCUGUGCCAGcCGCc -3'
miRNA:   3'- cUUGGcugCGUuuUGACGCGGUC-GCG- -5'
6210 3' -53.5 NC_001844.1 + 113570 0.71 0.755498
Target:  5'- cAACCGAUggggccuugggGCAugGCUGCGCCcGGUGUa -3'
miRNA:   3'- cUUGGCUG-----------CGUuuUGACGCGG-UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 115340 0.69 0.862306
Target:  5'- --cCCGACGa---GCUGCGCCucgcgguccGCGCg -3'
miRNA:   3'- cuuGGCUGCguuuUGACGCGGu--------CGCG- -5'
6210 3' -53.5 NC_001844.1 + 115440 0.67 0.92838
Target:  5'- -cGCUgGGCuCGAGACUGCuGCCuGCGCc -3'
miRNA:   3'- cuUGG-CUGcGUUUUGACG-CGGuCGCG- -5'
6210 3' -53.5 NC_001844.1 + 115653 0.66 0.947903
Target:  5'- ---aCGGCGCAAGACgGCGgCC-GCGg -3'
miRNA:   3'- cuugGCUGCGUUUUGaCGC-GGuCGCg -5'
6210 3' -53.5 NC_001844.1 + 116924 0.66 0.947903
Target:  5'- -cAUCGACGgAAGACcaagccgaugGUGCCGGgGCg -3'
miRNA:   3'- cuUGGCUGCgUUUUGa---------CGCGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 119431 0.69 0.854419
Target:  5'- gGGAgCG-CGCAuggcACUGUGCCAGCuaGCa -3'
miRNA:   3'- -CUUgGCuGCGUuu--UGACGCGGUCG--CG- -5'
6210 3' -53.5 NC_001844.1 + 121729 0.69 0.846322
Target:  5'- cGGCCGAauaguuCGCAGAACaUGCGgUAcGCGCg -3'
miRNA:   3'- cUUGGCU------GCGUUUUG-ACGCgGU-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.