Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6210 | 3' | -53.5 | NC_001844.1 | + | 142776 | 0.66 | 0.952167 |
Target: 5'- aGAACCG-CGC-GGACcGCGa-GGCGCa -3' miRNA: 3'- -CUUGGCuGCGuUUUGaCGCggUCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 140663 | 0.66 | 0.956191 |
Target: 5'- --uCCGGaGCAAAaucGCUGCGCUGGCu- -3' miRNA: 3'- cuuGGCUgCGUUU---UGACGCGGUCGcg -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 137749 | 0.68 | 0.910498 |
Target: 5'- gGGGCCGGgaGCGuu-CUGCGCUccgccguGGCGCc -3' miRNA: 3'- -CUUGGCUg-CGUuuuGACGCGG-------UCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 137344 | 0.67 | 0.922874 |
Target: 5'- --cCCGAgG-AAGAgaGCGCCAGCaGCg -3' miRNA: 3'- cuuGGCUgCgUUUUgaCGCGGUCG-CG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 136772 | 0.66 | 0.947903 |
Target: 5'- cGGCCGGgGUgAGAugUGUGCCGGaagGCa -3' miRNA: 3'- cUUGGCUgCG-UUUugACGCGGUCg--CG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 136567 | 0.68 | 0.911112 |
Target: 5'- aGAACCGG-GgGAGACUGCGgaGGCGg -3' miRNA: 3'- -CUUGGCUgCgUUUUGACGCggUCGCg -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 128429 | 0.66 | 0.952167 |
Target: 5'- uGGCCGAUGUgguaGAggUUGUGUUAGCuGCg -3' miRNA: 3'- cUUGGCUGCG----UUuuGACGCGGUCG-CG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 121729 | 0.69 | 0.846322 |
Target: 5'- cGGCCGAauaguuCGCAGAACaUGCGgUAcGCGCg -3' miRNA: 3'- cUUGGCU------GCGUUUUG-ACGCgGU-CGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 119431 | 0.69 | 0.854419 |
Target: 5'- gGGAgCG-CGCAuggcACUGUGCCAGCuaGCa -3' miRNA: 3'- -CUUgGCuGCGUuu--UGACGCGGUCG--CG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 116924 | 0.66 | 0.947903 |
Target: 5'- -cAUCGACGgAAGACcaagccgaugGUGCCGGgGCg -3' miRNA: 3'- cuUGGCUGCgUUUUGa---------CGCGGUCgCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 115653 | 0.66 | 0.947903 |
Target: 5'- ---aCGGCGCAAGACgGCGgCC-GCGg -3' miRNA: 3'- cuugGCUGCGUUUUGaCGC-GGuCGCg -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 115440 | 0.67 | 0.92838 |
Target: 5'- -cGCUgGGCuCGAGACUGCuGCCuGCGCc -3' miRNA: 3'- cuUGG-CUGcGUUUUGACG-CGGuCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 115340 | 0.69 | 0.862306 |
Target: 5'- --cCCGACGa---GCUGCGCCucgcgguccGCGCg -3' miRNA: 3'- cuuGGCUGCguuuUGACGCGGu--------CGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 113570 | 0.71 | 0.755498 |
Target: 5'- cAACCGAUggggccuugggGCAugGCUGCGCCcGGUGUa -3' miRNA: 3'- cUUGGCUG-----------CGUuuUGACGCGG-UCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 110895 | 0.67 | 0.943394 |
Target: 5'- aGGCCa--GCA--GCUGUGCCAGcCGCc -3' miRNA: 3'- cUUGGcugCGUuuUGACGCGGUC-GCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 101193 | 0.71 | 0.74563 |
Target: 5'- aGGCUGugGUuGAACUGgcgagguguacCGCCAGCGUg -3' miRNA: 3'- cUUGGCugCGuUUUGAC-----------GCGGUCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 88803 | 0.68 | 0.884636 |
Target: 5'- -uGCCuccACGC---GCUGCGCgAGCGCc -3' miRNA: 3'- cuUGGc--UGCGuuuUGACGCGgUCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 88340 | 0.66 | 0.959978 |
Target: 5'- gGggUCGGaacguUGCAcgacuGCUGCGaaaCAGCGCa -3' miRNA: 3'- -CuuGGCU-----GCGUuu---UGACGCg--GUCGCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 83406 | 0.67 | 0.938639 |
Target: 5'- gGAACCGGCGU--GGCUGUaGUUGGcCGCu -3' miRNA: 3'- -CUUGGCUGCGuuUUGACG-CGGUC-GCG- -5' |
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6210 | 3' | -53.5 | NC_001844.1 | + | 70360 | 0.7 | 0.838019 |
Target: 5'- cAACCGuCGCGccAAACU-CGCCcagAGCGCa -3' miRNA: 3'- cUUGGCuGCGU--UUUGAcGCGG---UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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