miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6218 5' -54.4 NC_001844.1 + 116060 0.65 0.951379
Target:  5'- cGGCGGG--GCCgACCAGaaCCUggcccagUUCUGc -3'
miRNA:   3'- -CCGCCCuaUGG-UGGUCgaGGA-------AAGAC- -5'
6218 5' -54.4 NC_001844.1 + 121683 0.66 0.947545
Target:  5'- cGGgGGGAgGCC-CC-GCUCCUcucCUGa -3'
miRNA:   3'- -CCgCCCUaUGGuGGuCGAGGAaa-GAC- -5'
6218 5' -54.4 NC_001844.1 + 113694 0.67 0.910983
Target:  5'- --aGGGAgUACCGCCAGCggg-UUCUGc -3'
miRNA:   3'- ccgCCCU-AUGGUGGUCGaggaAAGAC- -5'
6218 5' -54.4 NC_001844.1 + 66731 0.67 0.898333
Target:  5'- cGGCGGcGcUACCACCAGCaUCUa----- -3'
miRNA:   3'- -CCGCC-CuAUGGUGGUCG-AGGaaagac -5'
6218 5' -54.4 NC_001844.1 + 143351 0.67 0.898333
Target:  5'- -cCGGGAgcucccccGCCGCCGGCUCCa----- -3'
miRNA:   3'- ccGCCCUa-------UGGUGGUCGAGGaaagac -5'
6218 5' -54.4 NC_001844.1 + 101178 0.68 0.870206
Target:  5'- uGGCGaGGuGUACCGCCAGCguggCCa----- -3'
miRNA:   3'- -CCGC-CC-UAUGGUGGUCGa---GGaaagac -5'
6218 5' -54.4 NC_001844.1 + 144595 0.69 0.838565
Target:  5'- cGGCGGGcuccacgGCC-CCGGCUCCg----- -3'
miRNA:   3'- -CCGCCCua-----UGGuGGUCGAGGaaagac -5'
6218 5' -54.4 NC_001844.1 + 89437 0.71 0.717241
Target:  5'- gGGgGGGaAUGCCAcCCAGCcauUCCUgaCUGg -3'
miRNA:   3'- -CCgCCC-UAUGGU-GGUCG---AGGAaaGAC- -5'
6218 5' -54.4 NC_001844.1 + 132243 0.72 0.676385
Target:  5'- aGGUGGGcccacacGCCaACCGGCUCCacUCUGa -3'
miRNA:   3'- -CCGCCCua-----UGG-UGGUCGAGGaaAGAC- -5'
6218 5' -54.4 NC_001844.1 + 98029 0.77 0.400431
Target:  5'- gGGCGGGGUuuugACCGCgAGCUCUUUUUa- -3'
miRNA:   3'- -CCGCCCUA----UGGUGgUCGAGGAAAGac -5'
6218 5' -54.4 NC_001844.1 + 78107 1.1 0.003074
Target:  5'- aGGCGGGAUACCACCAGCUCCUUUCUGu -3'
miRNA:   3'- -CCGCCCUAUGGUGGUCGAGGAAAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.