miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
622 5' -53.2 AC_000017.1 + 28299 0.66 0.719572
Target:  5'- gCAGGuuuGGGUGGgUGAagacGGUGGCGUUUa -3'
miRNA:   3'- gGUUUu--UUCGCCgACU----CCGCCGCAGA- -5'
622 5' -53.2 AC_000017.1 + 28489 0.66 0.708343
Target:  5'- aCAAucAGGCGG-UGGGuGCGGCGa-- -3'
miRNA:   3'- gGUUuuUUCGCCgACUC-CGCCGCaga -5'
622 5' -53.2 AC_000017.1 + 10455 0.66 0.697032
Target:  5'- uCCAGGugaugccGGCGGCgguggugGAGGCGcGCGg-- -3'
miRNA:   3'- -GGUUUuu-----UCGCCGa------CUCCGC-CGCaga -5'
622 5' -53.2 AC_000017.1 + 33176 0.67 0.662735
Target:  5'- uCCAAcuu-GCGGUUGcucaacGGGCGGCGa-- -3'
miRNA:   3'- -GGUUuuuuCGCCGAC------UCCGCCGCaga -5'
622 5' -53.2 AC_000017.1 + 23938 0.67 0.651223
Target:  5'- ---uGGGGGCGcGCggGGGGCGGCGg-- -3'
miRNA:   3'- gguuUUUUCGC-CGa-CUCCGCCGCaga -5'
622 5' -53.2 AC_000017.1 + 12330 0.67 0.639692
Target:  5'- aCGGAcccGGCGGUgcGGGCGGCG-CUg -3'
miRNA:   3'- gGUUUuu-UCGCCGacUCCGCCGCaGA- -5'
622 5' -53.2 AC_000017.1 + 20802 0.67 0.639692
Target:  5'- -----cAAGC-GUUGAGGCGGUGUUg -3'
miRNA:   3'- gguuuuUUCGcCGACUCCGCCGCAGa -5'
622 5' -53.2 AC_000017.1 + 14192 0.68 0.559375
Target:  5'- cCUAcGAGAGCGuGgUGAGcGCGGCGcCa -3'
miRNA:   3'- -GGUuUUUUCGC-CgACUC-CGCCGCaGa -5'
622 5' -53.2 AC_000017.1 + 15048 0.68 0.558243
Target:  5'- aCCGAAcagggcgGGGGUGGCgcAGGCGGCGg-- -3'
miRNA:   3'- -GGUUU-------UUUCGCCGacUCCGCCGCaga -5'
622 5' -53.2 AC_000017.1 + 10343 0.69 0.536861
Target:  5'- aCCAAAAAGuGCGGCgGcGGCuGGCGg-- -3'
miRNA:   3'- -GGUUUUUU-CGCCGaCuCCG-CCGCaga -5'
622 5' -53.2 AC_000017.1 + 11146 0.69 0.503713
Target:  5'- gUCAGGAGGggcaacauccGCGGCUGAcGCGGCGg-- -3'
miRNA:   3'- -GGUUUUUU----------CGCCGACUcCGCCGCaga -5'
622 5' -53.2 AC_000017.1 + 15196 0.7 0.482113
Target:  5'- -aGGAGAAGCGcGCUGAGGCcgaGGCa--- -3'
miRNA:   3'- ggUUUUUUCGC-CGACUCCG---CCGcaga -5'
622 5' -53.2 AC_000017.1 + 9744 0.7 0.471483
Target:  5'- aCCGuggcGGGCGGCaGcGGGCGGCgGUCg -3'
miRNA:   3'- -GGUuuu-UUCGCCGaC-UCCGCCG-CAGa -5'
622 5' -53.2 AC_000017.1 + 13606 0.71 0.43021
Target:  5'- aCAGcgcGAGCaGGCaGAGGCGGCG-CUg -3'
miRNA:   3'- gGUUuu-UUCG-CCGaCUCCGCCGCaGA- -5'
622 5' -53.2 AC_000017.1 + 29465 0.72 0.337043
Target:  5'- uCCAGGAAAGCcugacuuuaaGGUUGuAGGCGuGUGUCUu -3'
miRNA:   3'- -GGUUUUUUCG----------CCGAC-UCCGC-CGCAGA- -5'
622 5' -53.2 AC_000017.1 + 3857 0.73 0.328574
Target:  5'- ------cAGCGGCUGAagcGGCGGCGgaggCUg -3'
miRNA:   3'- gguuuuuUCGCCGACU---CCGCCGCa---GA- -5'
622 5' -53.2 AC_000017.1 + 8471 0.76 0.191622
Target:  5'- uCCAG--GGGCuGGUUGGuGGCGGCGUCg -3'
miRNA:   3'- -GGUUuuUUCG-CCGACU-CCGCCGCAGa -5'
622 5' -53.2 AC_000017.1 + 23976 1.09 0.000851
Target:  5'- cCCAAAAAAGCGGCUGAGGCGGCGUCUc -3'
miRNA:   3'- -GGUUUUUUCGCCGACUCCGCCGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.