miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6245 3' -63 NC_001844.1 + 28642 0.66 0.649084
Target:  5'- gCCugCUgaCgGaaaaCUCCCCGCCUCCa -3'
miRNA:   3'- gGGugGAggGgUg---GAGGGGUGGAGGg -5'
6245 3' -63 NC_001844.1 + 143341 0.66 0.636519
Target:  5'- cCCCGCCg--CCGgCUCCaggggcucggagcgCCGCUUCCCg -3'
miRNA:   3'- -GGGUGGaggGGUgGAGG--------------GGUGGAGGG- -5'
6245 3' -63 NC_001844.1 + 25676 0.66 0.62975
Target:  5'- gCCCACCauugaaaCC-CCUCCCCuaaAUUUCCCu -3'
miRNA:   3'- -GGGUGGagg----GGuGGAGGGG---UGGAGGG- -5'
6245 3' -63 NC_001844.1 + 136660 0.66 0.620082
Target:  5'- aCCCgGCCgcgCCCggucagugCGCCUaggCUCCACgCUCCCg -3'
miRNA:   3'- -GGG-UGGa--GGG--------GUGGA---GGGGUG-GAGGG- -5'
6245 3' -63 NC_001844.1 + 145432 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145396 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145360 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145324 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145288 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145252 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145216 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 145180 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 143699 0.66 0.610423
Target:  5'- gCCAgCUCUCCAaagcgcgcgcCCUCCCUgGCCggaggCCCg -3'
miRNA:   3'- gGGUgGAGGGGU----------GGAGGGG-UGGa----GGG- -5'
6245 3' -63 NC_001844.1 + 145468 0.67 0.581555
Target:  5'- aCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6245 3' -63 NC_001844.1 + 117005 0.67 0.57199
Target:  5'- uUCCACC-CUCgGCCUCCCCcgaggggagGCCggcgCCa -3'
miRNA:   3'- -GGGUGGaGGGgUGGAGGGG---------UGGa---GGg -5'
6245 3' -63 NC_001844.1 + 63708 0.67 0.571035
Target:  5'- gCCGCUccaaguacaagcgUCCCaacuGCCUCuCCCACCUUaCCa -3'
miRNA:   3'- gGGUGG-------------AGGGg---UGGAG-GGGUGGAG-GG- -5'
6245 3' -63 NC_001844.1 + 46844 0.67 0.566269
Target:  5'- uCCCGCCgcgguuuaugcagCCCAUUUCUgaagauuaacuaCCACCUCCCc -3'
miRNA:   3'- -GGGUGGag-----------GGGUGGAGG------------GGUGGAGGG- -5'
6245 3' -63 NC_001844.1 + 114503 0.67 0.552979
Target:  5'- aCCCGCUguUCCCCgagGCCUggcgCCCCGCgCUUaCCu -3'
miRNA:   3'- -GGGUGG--AGGGG---UGGA----GGGGUG-GAG-GG- -5'
6245 3' -63 NC_001844.1 + 106525 0.68 0.524836
Target:  5'- aCCACCgcUCCCACaaCCCCGCUUUgCg -3'
miRNA:   3'- gGGUGGa-GGGGUGgaGGGGUGGAGgG- -5'
6245 3' -63 NC_001844.1 + 115484 0.68 0.524836
Target:  5'- aUCC-CCUCuCCCGCCUgCCC---UCCCg -3'
miRNA:   3'- -GGGuGGAG-GGGUGGAgGGGuggAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.