Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6248 | 3' | -49.8 | NC_001844.1 | + | 23453 | 0.66 | 0.996772 |
Target: 5'- aAC-AGGAACUCAcuucAGAGCCAGCcuGCUUg -3' miRNA: 3'- gUGaUCUUUGGGU----UUUCGGUCG--UGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 4354 | 0.66 | 0.993816 |
Target: 5'- gGCUGGAAcCCUAGAGGCUAuagacuuGCACa- -3' miRNA: 3'- gUGAUCUUuGGGUUUUCGGU-------CGUGgg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 138422 | 0.66 | 0.993908 |
Target: 5'- gACUAGuguAUaUAuuAGCCAGCGCCUc -3' miRNA: 3'- gUGAUCuu-UGgGUuuUCGGUCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 110992 | 0.66 | 0.994685 |
Target: 5'- uCGCccAGAAAacCCCAGAcccgugcacccaaGGCCuaacGCACCCa -3' miRNA: 3'- -GUGa-UCUUU--GGGUUU-------------UCGGu---CGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 53828 | 0.66 | 0.994766 |
Target: 5'- -uUUAGcAACCCAAAAGCaugaacaCACCCu -3' miRNA: 3'- guGAUCuUUGGGUUUUCGguc----GUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 31415 | 0.66 | 0.994766 |
Target: 5'- ---gGGGAACCgaGGGAGCCGacGCACCa -3' miRNA: 3'- gugaUCUUUGGg-UUUUCGGU--CGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 114664 | 0.66 | 0.995524 |
Target: 5'- gUACUAGGc-CCCucGAGCUuuGGgGCCCa -3' miRNA: 3'- -GUGAUCUuuGGGuuUUCGG--UCgUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 96620 | 0.66 | 0.995524 |
Target: 5'- gCGCUAGggGCUauaucuGCUAGCGCg- -3' miRNA: 3'- -GUGAUCuuUGGguuuu-CGGUCGUGgg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 110873 | 0.66 | 0.995524 |
Target: 5'- cCACUGGugGCCC---GGCCAGacaagaaaAUCCg -3' miRNA: 3'- -GUGAUCuuUGGGuuuUCGGUCg-------UGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 93484 | 0.66 | 0.995524 |
Target: 5'- gACUcGGAACCuCAAgcGaCCAGUACUCu -3' miRNA: 3'- gUGAuCUUUGG-GUUuuC-GGUCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 120269 | 0.66 | 0.996772 |
Target: 5'- cCGCcgGGAAGCCU---GGCgGGCACgCg -3' miRNA: 3'- -GUGa-UCUUUGGGuuuUCGgUCGUGgG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 141430 | 0.66 | 0.996772 |
Target: 5'- gGgUGGGAGCgCCGguuGAAGCCgcaaaAGCGCCg -3' miRNA: 3'- gUgAUCUUUG-GGU---UUUCGG-----UCGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 112229 | 0.66 | 0.99619 |
Target: 5'- aCACUAu--ACCCAGAacauugguauAGCaCAGUACCa -3' miRNA: 3'- -GUGAUcuuUGGGUUU----------UCG-GUCGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 58796 | 0.66 | 0.99619 |
Target: 5'- gGCgcaGAACUC-GAGGCCGGC-CCCa -3' miRNA: 3'- gUGaucUUUGGGuUUUCGGUCGuGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 115267 | 0.66 | 0.99619 |
Target: 5'- aCGCggaGGGAGCCCGGgcccGGGCCucGGCcuggaccaucACCCa -3' miRNA: 3'- -GUGa--UCUUUGGGUU----UUCGG--UCG----------UGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 59581 | 0.66 | 0.996127 |
Target: 5'- aGCUGGccacguuuUCCAaugcugcGAGGCCAGC-CCCa -3' miRNA: 3'- gUGAUCuuu-----GGGU-------UUUCGGUCGuGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 96160 | 0.67 | 0.992939 |
Target: 5'- aACUuuGAAAUCgGuuAGAGUCAGCGCUCa -3' miRNA: 3'- gUGAu-CUUUGGgU--UUUCGGUCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 55591 | 0.67 | 0.992939 |
Target: 5'- -gUUGGggGCCUuAGAGCUuGC-CCCa -3' miRNA: 3'- guGAUCuuUGGGuUUUCGGuCGuGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 143670 | 0.67 | 0.990245 |
Target: 5'- gGCcGGAGGCCCGuugcagcgggcugcGAugguAGCCAGgGCCUg -3' miRNA: 3'- gUGaUCUUUGGGU--------------UU----UCGGUCgUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 28818 | 0.67 | 0.989282 |
Target: 5'- aCGCUAGAAGCUgCGAAauGGUCAGUugUg -3' miRNA: 3'- -GUGAUCUUUGG-GUUU--UCGGUCGugGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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