Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6248 | 3' | -49.8 | NC_001844.1 | + | 4354 | 0.66 | 0.993816 |
Target: 5'- gGCUGGAAcCCUAGAGGCUAuagacuuGCACa- -3' miRNA: 3'- gUGAUCUUuGGGUUUUCGGU-------CGUGgg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 5309 | 0.68 | 0.976698 |
Target: 5'- aACUGGAAACagCGcgccugggaaaaacAGAGCCaagaagcAGCACCCg -3' miRNA: 3'- gUGAUCUUUGg-GU--------------UUUCGG-------UCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 17429 | 0.7 | 0.954831 |
Target: 5'- aGCUGGAAGaucgUCCGAGGGCaaaggcaucucCAGCACCa -3' miRNA: 3'- gUGAUCUUU----GGGUUUUCG-----------GUCGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 18136 | 0.71 | 0.919719 |
Target: 5'- cCGCUGGAuuCCCu-AAGgUAGCGCCa -3' miRNA: 3'- -GUGAUCUuuGGGuuUUCgGUCGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 22158 | 0.69 | 0.972313 |
Target: 5'- gACUAGAAauucACCUAAA--CCAGCGCaCCc -3' miRNA: 3'- gUGAUCUU----UGGGUUUucGGUCGUG-GG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 23453 | 0.66 | 0.996772 |
Target: 5'- aAC-AGGAACUCAcuucAGAGCCAGCcuGCUUg -3' miRNA: 3'- gUGaUCUUUGGGU----UUUCGGUCG--UGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 28818 | 0.67 | 0.989282 |
Target: 5'- aCGCUAGAAGCUgCGAAauGGUCAGUugUg -3' miRNA: 3'- -GUGAUCUUUGG-GUUU--UCGGUCGugGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 31415 | 0.66 | 0.994766 |
Target: 5'- ---gGGGAACCgaGGGAGCCGacGCACCa -3' miRNA: 3'- gugaUCUUUGGg-UUUUCGGU--CGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 53828 | 0.66 | 0.994766 |
Target: 5'- -uUUAGcAACCCAAAAGCaugaacaCACCCu -3' miRNA: 3'- guGAUCuUUGGGUUUUCGguc----GUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 55591 | 0.67 | 0.992939 |
Target: 5'- -gUUGGggGCCUuAGAGCUuGC-CCCa -3' miRNA: 3'- guGAUCuuUGGGuUUUCGGuCGuGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 56660 | 0.71 | 0.919719 |
Target: 5'- aGCUGGGGACaaaaaCCAcAAGCCAGUGCUa -3' miRNA: 3'- gUGAUCUUUG-----GGUuUUCGGUCGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 57100 | 0.74 | 0.829396 |
Target: 5'- cCugUGGAGGCCgAGcaggugccggcauGAGCCAGCGCUUc -3' miRNA: 3'- -GugAUCUUUGGgUU-------------UUCGGUCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 58796 | 0.66 | 0.99619 |
Target: 5'- gGCgcaGAACUC-GAGGCCGGC-CCCa -3' miRNA: 3'- gUGaucUUUGGGuUUUCGGUCGuGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 59581 | 0.66 | 0.996127 |
Target: 5'- aGCUGGccacguuuUCCAaugcugcGAGGCCAGC-CCCa -3' miRNA: 3'- gUGAUCuuu-----GGGU-------UUUCGGUCGuGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 61363 | 0.74 | 0.793445 |
Target: 5'- gGCUccAGAgCCAGGAGCCAGCugCUg -3' miRNA: 3'- gUGAucUUUgGGUUUUCGGUCGugGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 64584 | 0.74 | 0.793445 |
Target: 5'- uCGCUuuGAGCguuuUCAGAAGCCAGCACCa -3' miRNA: 3'- -GUGAucUUUG----GGUUUUCGGUCGUGGg -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 67195 | 0.75 | 0.743842 |
Target: 5'- aGCUAGAgaaccGACgCAAAAcugcGCCAGCGCCUa -3' miRNA: 3'- gUGAUCU-----UUGgGUUUU----CGGUCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 78012 | 0.68 | 0.98612 |
Target: 5'- gGCgcGAuuuACCCGAGAcGCCAgGCgGCCCu -3' miRNA: 3'- gUGauCUu--UGGGUUUU-CGGU-CG-UGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 80470 | 0.68 | 0.982288 |
Target: 5'- gGCUAuGGGACCCAGuuugaAGUACCCa -3' miRNA: 3'- gUGAU-CUUUGGGUUuucggUCGUGGG- -5' |
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6248 | 3' | -49.8 | NC_001844.1 | + | 81108 | 0.71 | 0.93107 |
Target: 5'- uCGCUgAGAAGCCCAAGGGUuaacggUAGCACg- -3' miRNA: 3'- -GUGA-UCUUUGGGUUUUCG------GUCGUGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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