miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6255 5' -56.1 NC_001844.1 + 113940 0.66 0.910667
Target:  5'- aUCUACAUGcGGGCCACccucACCCcUcgGGu -3'
miRNA:   3'- -GGGUGUACcUCCGGUG----UGGGuGuaCC- -5'
6255 5' -56.1 NC_001844.1 + 12673 0.66 0.89827
Target:  5'- -aCACGuUGGggugGGGUUACACCCGCGcucuuUGGg -3'
miRNA:   3'- ggGUGU-ACC----UCCGGUGUGGGUGU-----ACC- -5'
6255 5' -56.1 NC_001844.1 + 115960 0.66 0.891727
Target:  5'- cCCCACAUcGGGGacGCCAUGgCgGCcgGGa -3'
miRNA:   3'- -GGGUGUA-CCUC--CGGUGUgGgUGuaCC- -5'
6255 5' -56.1 NC_001844.1 + 140093 0.67 0.884959
Target:  5'- cCCCA-AUGGgagGGGCCA-ACCCACAaaggccguuUGGa -3'
miRNA:   3'- -GGGUgUACC---UCCGGUgUGGGUGU---------ACC- -5'
6255 5' -56.1 NC_001844.1 + 127121 0.67 0.88427
Target:  5'- gUCGCAgucuUGGAGGCCAUGCaacaCACccccgguGUGGa -3'
miRNA:   3'- gGGUGU----ACCUCCGGUGUGg---GUG-------UACC- -5'
6255 5' -56.1 NC_001844.1 + 114994 0.67 0.873672
Target:  5'- cCCCGCAgcaccagagcagcgGGGGGCCGacaACCUGCucccGGg -3'
miRNA:   3'- -GGGUGUa-------------CCUCCGGUg--UGGGUGua--CC- -5'
6255 5' -56.1 NC_001844.1 + 57106 0.67 0.870764
Target:  5'- aCUACgccuGUGGAGGCCGagcagguGCCgGCAUGa -3'
miRNA:   3'- gGGUG----UACCUCCGGUg------UGGgUGUACc -5'
6255 5' -56.1 NC_001844.1 + 120118 0.67 0.847902
Target:  5'- cCCCACAUGGcuGGCCGug-UgGCAUGGu -3'
miRNA:   3'- -GGGUGUACCu-CCGGUgugGgUGUACC- -5'
6255 5' -56.1 NC_001844.1 + 41518 0.69 0.788135
Target:  5'- uUCCAgGUGGGGGCgGCuACCgGCAgcGGc -3'
miRNA:   3'- -GGGUgUACCUCCGgUG-UGGgUGUa-CC- -5'
6255 5' -56.1 NC_001844.1 + 56799 0.7 0.721604
Target:  5'- gCCGCGuagcUGGGGuaCACAaCCACAUGGu -3'
miRNA:   3'- gGGUGU----ACCUCcgGUGUgGGUGUACC- -5'
6255 5' -56.1 NC_001844.1 + 134943 0.7 0.691771
Target:  5'- aCCACA-GGuucAGGCU-CACCCAUGUGGc -3'
miRNA:   3'- gGGUGUaCC---UCCGGuGUGGGUGUACC- -5'
6255 5' -56.1 NC_001844.1 + 114634 0.71 0.641181
Target:  5'- gCCGCccGaGGGGCCACACC-GCcgGGg -3'
miRNA:   3'- gGGUGuaC-CUCCGGUGUGGgUGuaCC- -5'
6255 5' -56.1 NC_001844.1 + 114592 0.72 0.600529
Target:  5'- uCCC-CAUGGAGacuGCCACACgCCACcccccgGGg -3'
miRNA:   3'- -GGGuGUACCUC---CGGUGUG-GGUGua----CC- -5'
6255 5' -56.1 NC_001844.1 + 17594 0.77 0.360529
Target:  5'- -gCGCAUGGcGGCUACGCCCACAc-- -3'
miRNA:   3'- ggGUGUACCuCCGGUGUGGGUGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.