Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6286 | 5' | -49.4 | NC_001844.1 | + | 67455 | 0.66 | 0.99799 |
Target: 5'- --gAAUGCUAGagggGCgauaGGGGgUGACGCa -3' miRNA: 3'- cgaUUGCGAUUg---CGa---UCCCgAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 81091 | 0.66 | 0.99799 |
Target: 5'- gGUUAACGgUAGCacgGUUGGGGUaAGCGg -3' miRNA: 3'- -CGAUUGCgAUUG---CGAUCCCGaUUGCg -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 119388 | 0.66 | 0.997597 |
Target: 5'- aCUcuCGCcauACGCUGGGGU--GCGUu -3' miRNA: 3'- cGAuuGCGau-UGCGAUCCCGauUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 69703 | 0.66 | 0.997597 |
Target: 5'- cGCUGGCGCUucguggaGCUucucccguGGGU--ACGCa -3' miRNA: 3'- -CGAUUGCGAuug----CGAu-------CCCGauUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 136215 | 0.66 | 0.997597 |
Target: 5'- aCUggUGCU-GC-CUGGGGC--ACGCg -3' miRNA: 3'- cGAuuGCGAuUGcGAUCCCGauUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 6910 | 0.66 | 0.99714 |
Target: 5'- uGCUGACGCUcACGgUAGa-CUuuGCGCa -3' miRNA: 3'- -CGAUUGCGAuUGCgAUCccGAu-UGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 28062 | 0.67 | 0.996012 |
Target: 5'- --cAGCGC--GCGCUAGGuaUGuCGCa -3' miRNA: 3'- cgaUUGCGauUGCGAUCCcgAUuGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 3924 | 0.67 | 0.99561 |
Target: 5'- uGCUAcagcaGCGaCUGcaaGCUGGGGCUAcugguggacaucacaACGUg -3' miRNA: 3'- -CGAU-----UGC-GAUug-CGAUCCCGAU---------------UGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 94769 | 0.67 | 0.995324 |
Target: 5'- cGCUGcgcucaccgcGCGCaGAUGCUAGGaaguccacuaGCU-GCGCg -3' miRNA: 3'- -CGAU----------UGCGaUUGCGAUCC----------CGAuUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 144517 | 0.67 | 0.995324 |
Target: 5'- gGUUGGcCGCgcgGugGCUcuGGGCU-GCGCc -3' miRNA: 3'- -CGAUU-GCGa--UugCGAu-CCCGAuUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 141627 | 0.67 | 0.993658 |
Target: 5'- gGC-AGCGCUuGCGCUuAGaGGCccggccAACGCa -3' miRNA: 3'- -CGaUUGCGAuUGCGA-UC-CCGa-----UUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 47373 | 0.67 | 0.993658 |
Target: 5'- uCUAACGCguuUGCUucagagAGGGUUAAgCGCc -3' miRNA: 3'- cGAUUGCGauuGCGA------UCCCGAUU-GCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 76998 | 0.67 | 0.992663 |
Target: 5'- aCUcuCGCUcGGCGUUGGGuGCUAGCa- -3' miRNA: 3'- cGAuuGCGA-UUGCGAUCC-CGAUUGcg -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 31875 | 0.68 | 0.9903 |
Target: 5'- gGCcGAUGC---CGUUAGGGCUcACGUg -3' miRNA: 3'- -CGaUUGCGauuGCGAUCCCGAuUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 144214 | 0.68 | 0.9903 |
Target: 5'- gGCUGAgG-UGGCGCUcccGGGGCcAGCGa -3' miRNA: 3'- -CGAUUgCgAUUGCGA---UCCCGaUUGCg -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 129566 | 0.68 | 0.990168 |
Target: 5'- aCUGugGCUucGcaaagauaaucgcGCGUUGGGGCaccAACGCg -3' miRNA: 3'- cGAUugCGA--U-------------UGCGAUCCCGa--UUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 127864 | 0.68 | 0.986382 |
Target: 5'- aGCUGugGUUGAUGUUGGugauucggacaccgaGGUUGAUGUa -3' miRNA: 3'- -CGAUugCGAUUGCGAUC---------------CCGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 24463 | 0.68 | 0.985684 |
Target: 5'- aGCUuaaGCUcaaaAACGCUGGGGCcg-UGCu -3' miRNA: 3'- -CGAuugCGA----UUGCGAUCCCGauuGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 13472 | 0.69 | 0.983821 |
Target: 5'- uGgUAGCGCcaAACGCUuuuGGGCUGG-GCu -3' miRNA: 3'- -CgAUUGCGa-UUGCGAu--CCCGAUUgCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 65006 | 0.69 | 0.98178 |
Target: 5'- aGCUAGCaGCcaAACGgUAGacGCUAGCGCg -3' miRNA: 3'- -CGAUUG-CGa-UUGCgAUCc-CGAUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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